Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VTAP4600_RS05720 Genome accession   NZ_LT960611
Coordinates   1299883..1301283 (-) Length   466 a.a.
NCBI ID   WP_102521910.1    Uniprot ID   A0A2N8ZBA6
Organism   Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1294883..1306283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VTAP4600_RS05685 (VTAP4600_A1218) moaE 1295425..1295877 (-) 453 WP_102521903.1 molybdopterin synthase catalytic subunit MoaE -
  VTAP4600_RS05690 (VTAP4600_A1219) moaD 1295879..1296124 (-) 246 WP_102521904.1 molybdopterin synthase sulfur carrier subunit -
  VTAP4600_RS05695 (VTAP4600_A1220) moaC 1296121..1296600 (-) 480 WP_102521905.1 cyclic pyranopterin monophosphate synthase MoaC -
  VTAP4600_RS05700 (VTAP4600_A1221) moaB 1296612..1297124 (-) 513 WP_102521906.1 molybdenum cofactor biosynthesis protein B -
  VTAP4600_RS05705 (VTAP4600_A1222) moaA 1297185..1298174 (-) 990 WP_102521907.1 GTP 3',8-cyclase MoaA -
  VTAP4600_RS05710 (VTAP4600_A1223) - 1298498..1299385 (+) 888 WP_102521908.1 YvcK family protein -
  VTAP4600_RS05715 (VTAP4600_A1224) - 1299528..1299878 (-) 351 WP_102521909.1 Hpt domain-containing protein -
  VTAP4600_RS05720 (VTAP4600_A1225) luxO 1299883..1301283 (-) 1401 WP_102521910.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VTAP4600_RS05725 (VTAP4600_A1226) uvrB 1301607..1303637 (-) 2031 WP_102521911.1 excinuclease ABC subunit UvrB -
  VTAP4600_RS05735 (VTAP4600_A1230) rsxA 1304526..1305107 (+) 582 WP_102521912.1 electron transport complex subunit RsxA -
  VTAP4600_RS05740 (VTAP4600_A1231) rsxB 1305107..1305688 (+) 582 WP_102521913.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51704.02 Da        Isoelectric Point: 5.7214

>NTDB_id=1148309 VTAP4600_RS05720 WP_102521910.1 1299883..1301283(-) (luxO) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
MQDKHTSPKTKYLLMVEDTASVAALYRSYLTPLGLDISIVGTGKDAITSLEHRTPDLILLDLRLPDMTGMDVLSSVKKKY
PDVPVIFMTAHGSIDTAVEAMRRGAQDFLIKPCEADRLRVTVNNGIRKAGKLKALADEPDNNNYQGFIGSSQTMQAVYRT
IDSAAPSKASVFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGASTDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWTEVQQGRFREDLYYRLYVIPLHLPPLRD
RNEDVVEIAYSLLGHMSTEEGKGFVRFSQQVVDRFVEFEWPGNVRQLQNVLRNVVVLNHGNEITINMLPPPLNVSFLNDL
QGKNATEDISAKLSVEQIRPLWMTEKGAIEQAIDACEGNIPRAASYLDVSPSTLYRKLQTWKETQE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=1148309 VTAP4600_RS05720 WP_102521910.1 1299883..1301283(-) (luxO) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
ATGCAAGACAAACACACAAGTCCTAAAACAAAATACCTATTAATGGTTGAGGATACGGCGTCGGTTGCGGCTCTGTATCG
TTCCTACCTGACCCCGTTAGGTCTCGATATTAGTATCGTGGGTACGGGTAAAGACGCCATTACAAGTTTGGAACACCGAA
CTCCAGACCTCATTTTACTCGATCTACGCCTTCCTGATATGACGGGCATGGATGTTCTTTCTTCTGTGAAAAAGAAATAT
CCAGATGTGCCGGTTATTTTCATGACGGCTCATGGCTCTATTGATACCGCAGTAGAAGCCATGCGTCGCGGTGCACAAGA
CTTCCTGATTAAGCCATGTGAAGCCGACCGGCTGCGTGTTACGGTGAACAACGGTATCCGCAAAGCGGGTAAATTGAAAG
CACTTGCTGATGAGCCAGATAATAATAATTATCAGGGCTTCATTGGCAGTAGCCAAACGATGCAAGCCGTTTATCGCACC
ATTGACTCCGCTGCACCAAGTAAAGCTTCGGTATTCATTACCGGTGAAAGTGGAACTGGTAAAGAAGTGTGTGCAGAAGC
CATCCATGCGGCCAGTAAACGTGGCGACAAACCATTTATTGCAATCAACTGTGCCGCTATTCCTAAAGATCTGATCGAAA
GTGAGCTGTTTGGTCACGTGAAAGGGGCGTTTACAGGGGCTTCAACTGATCGTCAAGGAGCGGCTGAACTGGCTGATGGC
GGCACACTGTTTTTGGACGAACTGTGTGAAATGGACTTGGAACTTCAAACCAAGCTCCTAAGGTTTATTCAAACAGGTAC
GTTCCAAAAAGTGGGTTCTTCGAAAATGAAGAGTGTTGACGTCCGCTTTGTCTGCGCGACTAACCGTGATCCTTGGACCG
AAGTGCAGCAAGGGCGTTTCAGGGAAGATCTTTATTATCGATTGTACGTGATTCCACTGCATCTCCCGCCACTGCGCGAT
AGAAACGAAGACGTGGTCGAAATTGCCTATTCATTACTCGGTCATATGTCGACTGAAGAAGGCAAAGGTTTTGTGCGCTT
TTCTCAGCAAGTGGTCGACAGGTTTGTCGAATTTGAATGGCCGGGCAACGTAAGACAATTGCAAAATGTGCTGCGTAACG
TTGTGGTGCTTAACCATGGCAATGAGATAACAATAAACATGTTACCGCCGCCATTGAATGTGTCTTTTTTAAATGATTTA
CAAGGGAAAAATGCAACTGAGGATATTTCAGCTAAACTTTCAGTAGAGCAAATCAGACCATTATGGATGACCGAAAAAGG
TGCGATAGAACAGGCTATCGATGCATGTGAAGGAAATATTCCTCGAGCAGCGAGTTACTTAGATGTAAGCCCATCGACAT
TATATCGAAAACTCCAAACCTGGAAGGAAACGCAGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(421-459)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8ZBA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

83.036

96.137

0.798

Multiple sequence alignment