Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VTAP4600_RS03460 Genome accession   NZ_LT960611
Coordinates   749147..750571 (+) Length   474 a.a.
NCBI ID   WP_102521515.1    Uniprot ID   A0A2N8Z9Z2
Organism   Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 744147..755571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VTAP4600_RS03425 (VTAP4600_A0728) - 744578..745033 (+) 456 WP_102521509.1 exoribonuclease R -
  VTAP4600_RS03430 (VTAP4600_A0729) - 745145..745525 (-) 381 WP_102521510.1 VOC family protein -
  VTAP4600_RS03435 (VTAP4600_A0730) - 745673..745972 (-) 300 WP_102521511.1 YkgJ family cysteine cluster protein -
  VTAP4600_RS03440 (VTAP4600_A0731) - 746095..746535 (-) 441 WP_102521512.1 GNAT family N-acetyltransferase -
  VTAP4600_RS03445 (VTAP4600_A0733) - 746657..746989 (+) 333 WP_102521513.1 PBPRA1643 family SWIM/SEC-C metal-binding motif protein -
  VTAP4600_RS25885 (VTAP4600_A0734) - 747047..747208 (-) 162 WP_172443056.1 hypothetical protein -
  VTAP4600_RS03450 (VTAP4600_A0735) - 747433..748392 (+) 960 WP_172443057.1 transposase -
  VTAP4600_RS03455 (VTAP4600_A0736) - 748610..748888 (-) 279 WP_102521514.1 hypothetical protein -
  VTAP4600_RS03460 (VTAP4600_A0737) sbcB 749147..750571 (+) 1425 WP_102521515.1 exodeoxyribonuclease I Machinery gene
  VTAP4600_RS03465 (VTAP4600_A0738) - 750582..750944 (+) 363 WP_102521516.1 CidA/LrgA family protein -
  VTAP4600_RS03470 (VTAP4600_A0739) - 750946..751623 (+) 678 WP_102521517.1 LrgB family protein -
  VTAP4600_RS03475 (VTAP4600_A0740) cdd 751800..752687 (+) 888 WP_102521518.1 cytidine deaminase -
  VTAP4600_RS03480 (VTAP4600_A0741) purT 752931..754124 (+) 1194 WP_102521519.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  VTAP4600_RS03485 (VTAP4600_A0742) - 754197..754868 (-) 672 WP_102521520.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54428.88 Da        Isoelectric Point: 5.0799

>NTDB_id=1148306 VTAP4600_RS03460 WP_102521515.1 749147..750571(+) (sbcB) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
MSQDNQPTLFFFDYETWGVNPAIDRPCQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPAPEAALITGIMPQTAVSKGLSEP
EFIAKIHHELATPNTTSLGYNSIRFDDEVSRYTLYRNFLDPYAWAWQNGNSRWDLLDVMRTCYALRPDGIEWPEREDGFP
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKQAQPKLFDYLFSMRHKRKLNDLIDIVNMTPLMHVSGMLGPKCAY
TSWMVPVAWHPTNKNAVVMINLAFDPQPLINLDVDAIRERMYTKRDELAEGEQPIPVKLVQLNKCPTLAPAKTLTAENAE
KIGIDREQCLKNLALIKQHPEIREKLTELYSNERQYDKNPDVDTQLYDGFFSPADKAAMDIIRNAKPEDLGDLDISFSDD
RIAPLLFRYRARHYPHTLSEGEQQKWAAHCRGYYENRIEEYMLNLENLAHEHESDETKLAILKSVYRYVEKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1148306 VTAP4600_RS03460 WP_102521515.1 749147..750571(+) (sbcB) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
ATGTCACAAGACAACCAGCCTACTCTTTTCTTTTTCGATTATGAAACTTGGGGAGTAAACCCAGCAATCGATCGTCCTTG
CCAGTTTGCAGGGGTTCGTACCGATATGGATTTTAATATTATTGGTGAACCCTTAGTCATTTATTGTCAGCCACCTAGTG
ATTATCTACCGGCGCCTGAAGCTGCGTTGATCACAGGTATTATGCCGCAAACAGCGGTTTCTAAAGGGCTATCTGAGCCA
GAGTTCATCGCTAAGATTCACCACGAACTGGCAACACCGAATACCACCAGCCTTGGCTACAATAGCATTCGGTTCGATGA
TGAAGTGTCTCGTTATACGTTATACCGTAACTTTTTAGATCCTTACGCTTGGGCGTGGCAGAATGGCAACTCTCGCTGGG
ACTTATTAGATGTGATGCGTACTTGCTATGCCCTTCGACCAGACGGAATAGAATGGCCTGAAAGAGAAGACGGCTTTCCA
AGTTTTAAGCTGGAGCACCTATCAGTAGCCAATGGCATTGAACATGCAAATGCCCACGATGCGATGGCTGATGTTATCGC
TACCATTGAACTTGCAAAAAAAGTTAAGCAAGCTCAACCTAAACTCTTTGATTATCTATTTAGTATGCGGCACAAACGTA
AACTGAATGACTTAATTGATATCGTTAATATGACGCCACTAATGCATGTTTCAGGCATGCTTGGGCCTAAATGCGCCTAC
ACTAGTTGGATGGTTCCGGTTGCTTGGCACCCGACAAACAAAAATGCCGTCGTGATGATTAACTTGGCTTTCGATCCGCA
ACCATTAATCAATTTAGACGTCGATGCGATCCGCGAACGTATGTACACCAAACGCGATGAACTTGCCGAGGGGGAGCAGC
CTATTCCTGTGAAACTGGTGCAACTAAATAAATGCCCGACACTGGCTCCGGCTAAAACACTTACGGCAGAAAATGCCGAA
AAAATCGGAATTGATCGCGAACAGTGTTTGAAGAACTTAGCACTGATTAAACAGCACCCAGAGATCAGAGAAAAGCTGAC
AGAGCTATACAGCAACGAGCGTCAGTACGACAAAAATCCAGATGTAGATACCCAACTGTACGATGGATTTTTCTCGCCAG
CAGACAAAGCCGCAATGGACATCATTCGCAACGCTAAGCCCGAAGATCTTGGCGATCTCGATATTAGCTTCAGCGATGAT
CGTATCGCGCCACTTCTATTCCGTTATCGTGCTCGCCATTACCCTCACACGTTAAGCGAAGGCGAACAACAAAAGTGGGC
CGCACATTGTCGTGGCTATTACGAGAACCGTATTGAAGAATACATGCTTAATCTTGAAAACTTAGCTCACGAACATGAAA
GTGACGAAACGAAATTAGCTATATTAAAATCCGTTTATCGCTATGTAGAAAAACTTGTCTCATAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8Z9Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

74.788

99.578

0.745

Multiple sequence alignment