Detailed information    

insolico Bioinformatically predicted

Overview


Name   opaR   Type   Regulator
Locus tag   VTAP4600_RS01310 Genome accession   NZ_LT960611
Coordinates   277558..278169 (-) Length   203 a.a.
NCBI ID   WP_102521148.1    Uniprot ID   A0A2N8Z8M4
Organism   Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context


Location: 272558..283169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VTAP4600_RS01295 (VTAP4600_A0258) aceF 272875..274782 (+) 1908 WP_102521145.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  VTAP4600_RS01300 (VTAP4600_A0259) lpdA 275034..276461 (+) 1428 WP_102521146.1 dihydrolipoyl dehydrogenase -
  VTAP4600_RS01305 (VTAP4600_A0260) - 276573..277415 (-) 843 WP_102521147.1 HDOD domain-containing protein -
  VTAP4600_RS01310 (VTAP4600_A0261) opaR 277558..278169 (-) 612 WP_102521148.1 TetR/AcrR family transcriptional regulator Regulator
  VTAP4600_RS01315 (VTAP4600_A0262) hpt 278429..278959 (+) 531 WP_102521149.1 hypoxanthine phosphoribosyltransferase -
  VTAP4600_RS01320 (VTAP4600_A0263) can 279034..279696 (-) 663 WP_102521150.1 carbonate dehydratase -
  VTAP4600_RS01325 (VTAP4600_A0264) - 279978..281630 (+) 1653 WP_102521151.1 SulP family inorganic anion transporter -
  VTAP4600_RS01330 (VTAP4600_A0265) - 281756..282673 (+) 918 WP_102523849.1 ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 203 a.a.        Molecular weight: 23456.50 Da        Isoelectric Point: 5.3332

>NTDB_id=1148303 VTAP4600_RS01310 WP_102521148.1 277558..278169(-) (opaR) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
MDMVTKRPRTRLSPQKRKEQLHDIAIEVFARRGIGRGGHADIAEIAQVSVATVFNYFQTREDLVDEVLNQVEKHYSEFIN
KSIDTDASAEYNLNTLTNNIINSAIIGENWMKVWFEWSTSTRDEVWPLFLTCNESNQKKMELMFDNAMESGEICDRHNSA
DLANLFHGICYSLYVQANRNPDAQYLATVKESFLSMLCIYKQK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1148303 VTAP4600_RS01310 WP_102521148.1 277558..278169(-) (opaR) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
ATGGATATGGTAACAAAAAGACCAAGGACACGGCTTTCTCCTCAAAAACGAAAAGAACAACTTCATGATATTGCAATTGA
AGTGTTTGCACGCAGAGGGATTGGTCGAGGTGGGCACGCAGACATCGCTGAAATAGCACAAGTCTCCGTCGCTACCGTTT
TTAATTACTTTCAGACTCGCGAAGATTTAGTCGATGAAGTACTGAACCAAGTAGAGAAGCATTATTCTGAGTTCATTAAT
AAAAGCATCGATACAGATGCGAGCGCAGAATACAACCTCAATACACTCACCAACAACATCATTAACTCGGCTATTATTGG
TGAAAATTGGATGAAAGTATGGTTTGAATGGAGCACTTCTACACGAGACGAAGTCTGGCCATTATTTTTGACTTGCAACG
AAAGCAATCAAAAGAAAATGGAGCTAATGTTCGACAATGCGATGGAGAGTGGCGAGATTTGTGACCGCCATAACAGCGCC
GATCTAGCAAACTTATTCCACGGCATCTGTTATTCACTTTATGTGCAAGCCAATCGGAACCCTGATGCTCAATACTTAGC
AACCGTAAAGGAAAGCTTCCTTTCTATGCTTTGTATTTACAAGCAAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2N8Z8M4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

62.069

100

0.621

  hapR Vibrio cholerae C6706

59.596

97.537

0.581

  hapR Vibrio cholerae strain A1552

59.596

97.537

0.581


Multiple sequence alignment