Detailed information NTG1148113

Bioinformatically predicted

Overview

• Name: comL
• Type: Machinery gene
• Locus tag: CKV94_RS10250
• Genome accession: NZ_LT906482
• Coordinates: 2032799..2033608 (+)
• Length: 269 a.a.
• NCBI ID: WP_003822610.1
• Uniprot ID: C0DTP2
• Organism: Eikenella corrodens strain NCTC10596
• Function: DNA processing; DNA transport into the cytoplasm (predicted from homology) DNA processing DNA binding and uptake

Genomic Context

Location: 2027799..2038608

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKV94_RS10220 (SAMEA4412678_02011)	-	2028031..2028669 (+)	639	WP_003822603.1	tellurite resistance TerB family protein	-
CKV94_RS10225 (SAMEA4412678_02012)	-	2028748..2029332 (-)	585	WP_003822604.1	YhcB family protein	-
CKV94_RS10230 (SAMEA4412678_02013)	-	2029430..2029918 (-)	489	WP_003822605.1	DUF4279 domain-containing protein	-
CKV94_RS10235 (SAMEA4412678_02014)	-	2029929..2030432 (-)	504	WP_003822606.1	phosphatidylglycerophosphatase A	-
CKV94_RS10240 (SAMEA4412678_02015)	thiL	2030425..2031411 (-)	987	WP_003822607.1	thiamine-phosphate kinase	-
CKV94_RS10245 (SAMEA4412678_02016)	rluD	2031682..2032800 (-)	1119	WP_003822609.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
CKV94_RS10250 (SAMEA4412678_02017)	comL	2032799..2033608 (+)	810	WP_003822610.1	outer membrane protein assembly factor BamD	Machinery gene
CKV94_RS10255 (SAMEA4412678_02018)	-	2033694..2034125 (+)	432	WP_035580057.1	DUF4124 domain-containing protein	-
CKV94_RS10260 (SAMEA4412678_02019)	-	2034276..2035118 (+)	843	WP_003822613.1	J domain-containing protein	-
CKV94_RS10265 (SAMEA4412678_02020)	-	2035121..2035897 (+)	777	WP_003822616.1	ferredoxin--NADP reductase	-
CKV94_RS10270 (SAMEA4412678_02021)	aroG	2036172..2037224 (+)	1053	WP_035580061.1	3-deoxy-7-phosphoheptulonate synthase AroG	-
CKV94_RS10275 (SAMEA4412678_02022)	-	2037427..2037984 (+)	558	WP_003822619.1	RDD family protein	-

Sequence

Protein

• Length: 269 a.a.
• Molecular weight: 31311.39 Da
• Isoelectric Point: 8.9082

>NTDB_id=1148113 CKV94_RS10250 WP_003822610.1 2032799..2033608(+) (comL) [Eikenella corrodens strain NCTC10596]
MKKILLVTGLAVMLSACSSTSTTAVSQDAQITQDWSVDKLYAEAHDEMESRNYSRSVRLYEILRARFPNTRQAVQSRLDT
AYVYYKDEQQPQALAHVEQFLKLYPNHPNTDYALYLKGLIVLNQDKSIFNKLASQDWSDRDPKANREAYQVFNELITRFP
DSKYANDAREKMARLVDALGGNEMAIARYYMQRGAYLAAANRAQGIVSRYQNTRYVEEALAIMMTAYARLEKPELSSDTR
RVLAQNFPQSPYLQKEWQPDDIPWWRYWK

Nucleotide

• Length: 810 bp

>NTDB_id=1148113 CKV94_RS10250 WP_003822610.1 2032799..2033608(+) (comL) [Eikenella corrodens strain NCTC10596]
ATGAAAAAGATTCTTTTAGTTACCGGCCTGGCAGTGATGCTGTCGGCCTGCTCCAGCACTTCAACCACCGCTGTGAGCCA
AGATGCCCAGATTACGCAGGATTGGTCGGTAGATAAGCTGTATGCCGAAGCGCACGATGAAATGGAGAGCCGCAATTATA
GCCGTTCGGTGCGTTTATATGAAATTTTGCGGGCGCGTTTCCCCAACACCCGCCAAGCGGTGCAATCGCGGCTGGATACG
GCTTATGTGTATTACAAAGACGAACAGCAGCCGCAGGCCTTGGCGCATGTGGAGCAGTTTTTGAAGCTGTATCCCAACCA
TCCGAACACCGATTACGCGCTGTATCTGAAGGGCTTGATTGTGCTCAATCAAGACAAATCCATCTTCAACAAGCTGGCCT
CGCAGGATTGGTCCGACCGCGACCCGAAAGCAAACCGCGAAGCCTATCAGGTGTTTAACGAGCTCATCACCCGCTTCCCC
GATAGCAAATACGCCAACGACGCGCGCGAAAAAATGGCGCGCCTGGTGGATGCCTTGGGCGGCAACGAAATGGCCATCGC
CCGCTACTACATGCAGCGCGGCGCGTACTTGGCCGCCGCCAACCGTGCACAGGGGATTGTGAGCCGCTATCAGAATACGC
GCTATGTGGAAGAGGCGCTGGCGATTATGATGACCGCCTATGCCCGTTTGGAAAAACCGGAGTTGAGCAGCGACACCCGC
CGCGTGCTAGCACAAAACTTCCCGCAGAGTCCCTATTTGCAGAAAGAATGGCAGCCGGACGATATTCCGTGGTGGCGCTA
TTGGAAGTAG

Domains

Predicted by InterproScan.

• Prokaryotic membrane lipoprotein lipid attachment site (LPAM_1) (1-18)

• Outer membrane lipoprotein (YfiO) (36-238)

3D structure

• AlphaFold DB: C0DTP2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comL	Neisseria gonorrhoeae MS11	66.418	99.628	0.662
comL	Neisseria meningitidis MC58	66.045	99.628	0.658