Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CKV96_RS13705 Genome accession   NZ_LT906476
Coordinates   3013369..3014028 (-) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11286     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3008369..3019028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV96_RS13690 (SAMEA4040027_02691) - 3009268..3009927 (+) 660 WP_013101910.1 hypothetical protein -
  CKV96_RS13695 (SAMEA4040027_02692) lcl 3010095..3011477 (+) 1383 WP_014844754.1 collagen-like adhesin Lcl -
  CKV96_RS13700 (SAMEA4040027_02693) uvrC 3011501..3013357 (-) 1857 WP_014844755.1 excinuclease ABC subunit UvrC -
  CKV96_RS13705 (SAMEA4040027_02694) letA 3013369..3014028 (-) 660 WP_011947563.1 two-component system response regulator LetA Regulator
  CKV96_RS13710 (SAMEA4040027_02695) phhA 3014153..3014971 (-) 819 WP_014844756.1 phenylalanine 4-monooxygenase -
  CKV96_RS13715 (SAMEA4040027_02696) - 3015415..3016512 (+) 1098 WP_014844757.1 competence/damage-inducible protein A -
  CKV96_RS13720 (SAMEA4040027_02697) cgtA 3016471..3017496 (-) 1026 WP_014844758.1 Obg family GTPase CgtA -
  CKV96_RS13725 (SAMEA4040027_02698) rpmA 3017711..3017989 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  CKV96_RS13730 (SAMEA4040027_02699) rplU 3018002..3018313 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=1147983 CKV96_RS13705 WP_011947563.1 3013369..3014028(-) (letA) [Legionella pneumophila strain NCTC11286]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1147983 CKV96_RS13705 WP_011947563.1 3013369..3014028(-) (letA) [Legionella pneumophila strain NCTC11286]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGGGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACGCGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAAGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1

Multiple sequence alignment