Detailed information NTG1147883

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CKV73_RS09940
• Genome accession: NZ_LT906472
• Coordinates: 1696393..1697253 (+)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain NCTC13800
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1691393..1702253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKV73_RS09925 (SAMEA4076768_01753)	dapD	1691903..1692724 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
CKV73_RS09930 (SAMEA4076768_01754)	pgi	1692934..1694577 (-)	1644	WP_003689806.1	glucose-6-phosphate isomerase	-
CKV73_RS09935 (SAMEA4076768_01755)	pilG	1695087..1696319 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
CKV73_RS09940 (SAMEA4076768_01756)	pilD	1696393..1697253 (+)	861	WP_003689814.1	prepilin peptidase	Machinery gene
CKV73_RS09945 (SAMEA4076768_01757)	coaE	1697250..1697882 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
CKV73_RS09950 (SAMEA4076768_01758)	-	1697875..1698084 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
CKV73_RS09955 (SAMEA4076768_01759)	pilF	1698170..1699846 (-)	1677	WP_003689817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CKV73_RS09970 (SAMEA4076768_01761)	-	1700184..1700630 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
CKV73_RS09975 (SAMEA4076768_01762)	-	1700634..1701608 (-)	975	WP_003689819.1	polyprenyl synthetase family protein	-
CKV73_RS09985 (SAMEA4076768_01763)	rplU	1701832..1702140 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=1147883 CKV73_RS09940 WP_003689814.1 1696393..1697253(+) (pilD) [Neisseria gonorrhoeae strain NCTC13800]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=1147883 CKV73_RS09940 WP_003689814.1 1696393..1697253(+) (pilD) [Neisseria gonorrhoeae strain NCTC13800]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441