Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CKV73_RS01305 Genome accession   NZ_LT906472
Coordinates   221224..221619 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC13800     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 214427..226358 221224..221619 within 0


Gene organization within MGE regions


Location: 214427..226358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV73_RS13290 (SAMEA4076768_00198) - 214427..214771 (+) 345 WP_003691787.1 HAD hydrolase family protein -
  CKV73_RS13295 (SAMEA4076768_00199) - 214725..215378 (+) 654 Protein_204 TIGR01621 family pseudouridine synthase -
  CKV73_RS14510 - 221003..221119 (+) 117 Protein_205 competence protein ComE -
  CKV73_RS01305 (SAMEA4076768_00205) comE 221224..221619 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  CKV73_RS01310 (SAMEA4076768_00206) comP 221707..222156 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  CKV73_RS01320 (SAMEA4076768_00208) - 222533..222679 (-) 147 WP_003691757.1 hypothetical protein -
  CKV73_RS01325 - 223066..223656 (+) 591 WP_080229150.1 DNA cytosine methyltransferase -
  CKV73_RS01330 (SAMEA4076768_00209) - 223653..224024 (+) 372 WP_012503918.1 DNA cytosine methyltransferase -
  CKV73_RS14515 (SAMEA4076768_00210) - 224038..224895 (+) 858 WP_012503917.1 ATP-binding protein -
  CKV73_RS14520 (SAMEA4076768_00211) - 225085..225681 (+) 597 WP_012503916.1 TIGR02391 family protein -
  CKV73_RS01345 (SAMEA4076768_00212) - 225687..226109 (+) 423 WP_003691751.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=1147855 CKV73_RS01305 WP_003703428.1 221224..221619(+) (comE) [Neisseria gonorrhoeae strain NCTC13800]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1147855 CKV73_RS01305 WP_003703428.1 221224..221619(+) (comE) [Neisseria gonorrhoeae strain NCTC13800]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment