Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   CKV93_RS07265 Genome accession   NZ_LT906464
Coordinates   1476753..1477799 (-) Length   348 a.a.
NCBI ID   WP_095117383.1    Uniprot ID   A0A240C6C4
Organism   Staphylococcus muscae strain NCTC13833     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1471753..1482799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV93_RS07235 (SAMEA4412661_01480) - 1472697..1472903 (-) 207 WP_095117377.1 DUF1128 family protein -
  CKV93_RS07240 (SAMEA4412661_01481) - 1473139..1473600 (+) 462 WP_095117378.1 low molecular weight protein-tyrosine-phosphatase -
  CKV93_RS07245 (SAMEA4412661_01482) - 1473600..1473890 (+) 291 WP_095117379.1 hypothetical protein -
  CKV93_RS07250 (SAMEA4412661_01483) - 1474100..1475362 (+) 1263 WP_095117380.1 YihY/virulence factor BrkB family protein -
  CKV93_RS07255 (SAMEA4412661_01484) - 1475510..1476079 (+) 570 WP_095117381.1 carbonic anhydrase -
  CKV93_RS07260 (SAMEA4412661_01485) vraR 1476134..1476763 (-) 630 WP_095117382.1 response regulator transcription factor Regulator
  CKV93_RS07265 (SAMEA4412661_01486) vraS 1476753..1477799 (-) 1047 WP_095117383.1 sensor histidine kinase Regulator
  CKV93_RS07270 (SAMEA4412661_01487) liaF 1477796..1478500 (-) 705 WP_095117384.1 cell wall-active antibiotics response protein LiaF -
  CKV93_RS07275 (SAMEA4412661_01488) - 1478513..1478902 (-) 390 WP_095117385.1 hypothetical protein -
  CKV93_RS07280 (SAMEA4412661_01489) map 1479001..1479762 (-) 762 WP_095117386.1 type I methionyl aminopeptidase -
  CKV93_RS07285 (SAMEA4412661_01490) - 1479857..1480855 (+) 999 WP_095117387.1 aromatic acid exporter family protein -
  CKV93_RS07290 (SAMEA4412661_01491) - 1480905..1481630 (-) 726 WP_095117388.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40184.50 Da        Isoelectric Point: 5.4392

>NTDB_id=1147752 CKV93_RS07265 WP_095117383.1 1476753..1477799(-) (vraS) [Staphylococcus muscae strain NCTC13833]
MNHYIRTIGSMLILVYAMFTVFFFIDKVFVNIIFFQGMLYKQIFGISVFLFINLVVVFFCILVGSVIAYKINQQYDWLQE
QIERAIQGETVGINDHQIELYNETIGLYQTLVPLNQELHKLRIKTQNLTNEQYNMNDLKVKKIIEDERQRLARELHDSVS
QQLFAASLMLSAIKETELEPPLDQQIPTLEKMIQESQLEMRALLLHLRPIGLKDKTLGEGIKSLVTDLQRKVPMKVIYDI
DTFEVPKGIEDHLFRITQEAISNTLRHANGTQVSVELLNRDGHLLLRIQDDGIGFNPDEKMEQSYGLKNMRERATEIGAT
FHIVSLPNAGTRIEVKAPLDKEGQQYDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1147752 CKV93_RS07265 WP_095117383.1 1476753..1477799(-) (vraS) [Staphylococcus muscae strain NCTC13833]
ATGAATCATTATATCCGAACGATTGGTTCTATGTTGATATTAGTTTATGCAATGTTCACTGTGTTTTTCTTCATTGATAA
GGTATTTGTCAATATTATTTTTTTTCAAGGCATGTTGTATAAACAAATTTTCGGTATTTCAGTTTTTTTATTTATCAACT
TAGTTGTTGTATTTTTTTGTATTCTTGTCGGAAGTGTCATTGCGTATAAAATCAATCAACAATACGATTGGTTACAAGAA
CAAATTGAACGTGCTATACAAGGTGAGACAGTTGGTATTAATGATCATCAAATAGAACTATACAATGAAACGATTGGACT
TTATCAAACATTAGTTCCATTGAATCAAGAGTTGCATAAACTAAGAATTAAAACGCAGAATTTAACGAATGAACAGTATA
ATATGAATGACCTAAAGGTGAAAAAGATTATAGAAGATGAACGGCAACGTTTAGCACGTGAGCTACACGATAGTGTGTCT
CAACAGTTATTTGCGGCGAGTTTAATGTTGTCAGCGATTAAAGAGACAGAGTTGGAACCACCTTTAGATCAACAAATTCC
AACATTGGAGAAAATGATTCAAGAATCACAACTTGAGATGCGCGCATTGTTATTACACTTACGACCGATTGGTTTGAAAG
ATAAAACACTTGGAGAAGGAATCAAGTCACTAGTGACAGATTTGCAGCGCAAAGTACCGATGAAAGTTATTTATGACATC
GATACGTTTGAAGTGCCAAAGGGCATTGAAGATCATCTATTTCGTATTACTCAAGAAGCGATTTCTAATACATTAAGACA
TGCGAATGGGACACAAGTCAGTGTTGAGTTGTTGAATCGTGATGGACATCTTTTGTTGCGTATACAAGATGATGGCATCG
GATTTAACCCGGATGAAAAGATGGAACAGAGTTATGGATTAAAAAATATGAGAGAGCGTGCGACAGAGATTGGCGCAACG
TTCCATATCGTATCATTGCCGAATGCAGGAACGCGCATTGAGGTGAAAGCACCATTAGATAAGGAGGGTCAGCAGTATGA
CGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A240C6C4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

80.172

100

0.802


Multiple sequence alignment