Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CKV93_RS04255 Genome accession   NZ_LT906464
Coordinates   874579..875451 (+) Length   290 a.a.
NCBI ID   WP_095116365.1    Uniprot ID   -
Organism   Staphylococcus muscae strain NCTC13833     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 869579..880451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV93_RS04225 (SAMEA4412661_00862) - 869842..870627 (+) 786 WP_095116353.1 ribonuclease HII -
  CKV93_RS04230 (SAMEA4412661_00863) - 870755..871138 (+) 384 WP_095116355.1 hypothetical protein -
  CKV93_RS10625 (SAMEA4412661_00864) - 871135..871800 (+) 666 WP_095116357.1 hypothetical protein -
  CKV93_RS04240 (SAMEA4412661_00865) - 871886..872155 (+) 270 WP_095116359.1 hypothetical protein -
  CKV93_RS04245 (SAMEA4412661_00866) sucC 872376..873542 (+) 1167 WP_095116361.1 ADP-forming succinate--CoA ligase subunit beta -
  CKV93_RS04250 (SAMEA4412661_00867) sucD 873564..874472 (+) 909 WP_095116363.1 succinate--CoA ligase subunit alpha -
  CKV93_RS04255 (SAMEA4412661_00868) dprA 874579..875451 (+) 873 WP_095116365.1 DNA-processing protein DprA Machinery gene
  CKV93_RS04260 (SAMEA4412661_00869) topA 875554..877623 (+) 2070 WP_095116367.1 type I DNA topoisomerase -
  CKV93_RS04265 (SAMEA4412661_00870) trmFO 877646..878953 (+) 1308 WP_095116369.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CKV93_RS04270 (SAMEA4412661_00871) xerC 879199..880092 (+) 894 WP_169712256.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33211.19 Da        Isoelectric Point: 8.3344

>NTDB_id=1147736 CKV93_RS04255 WP_095116365.1 874579..875451(+) (dprA) [Staphylococcus muscae strain NCTC13833]
MTDKLTIEQLLLLLVYSGFSTRQIHKFFPNIERVNGNQSTLIEILESHQDKRIQRKINKLRHMNIQLIEQHLQDECIHTV
SLYAANYPTLLKHIYDPPTILFCRGQLQLLTYNQTLAIVGSRNHTHYTNKVLNDIMPHFASAQLEIVSGLAKGADACAHQ
LAIRYGCPTIAVLGFGHQHHYPKETKYLRNYMDRAQLTISEYPPFVPPAAYRFPERNRLISGLSKGVFITEAKERSGALI
TIDHALEQNRNVYVLPGDMYNPFTKGNLLRIQEGAEVVLSENDILKDYCQ

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1147736 CKV93_RS04255 WP_095116365.1 874579..875451(+) (dprA) [Staphylococcus muscae strain NCTC13833]
ATGACAGATAAATTAACGATTGAACAATTACTGTTGCTACTAGTATATAGTGGGTTTTCTACACGGCAAATCCACAAATT
CTTCCCGAATATAGAGAGAGTGAATGGCAACCAATCGACATTAATTGAAATACTAGAATCACATCAAGATAAAAGAATTC
AAAGAAAAATCAATAAGTTACGTCACATGAATATACAATTGATTGAGCAGCATTTACAAGATGAATGTATTCATACCGTC
AGTTTATATGCTGCCAATTATCCCACGCTTTTAAAACATATTTATGATCCCCCAACTATCCTATTTTGTCGTGGACAACT
TCAACTTTTAACATATAATCAAACACTTGCGATTGTAGGTTCTCGCAATCATACTCACTATACGAACAAAGTATTAAACG
ATATCATGCCACATTTTGCATCAGCACAATTAGAGATTGTATCAGGGCTAGCAAAGGGTGCAGATGCATGTGCGCATCAA
TTAGCGATTCGATACGGTTGTCCAACAATTGCTGTATTGGGATTTGGCCATCAACATCATTATCCGAAAGAAACGAAGTA
CTTACGCAACTATATGGACCGTGCACAATTAACAATTAGTGAATACCCGCCATTTGTACCACCAGCGGCTTATCGTTTTC
CCGAACGGAATCGACTTATTAGCGGTCTGTCAAAAGGAGTATTTATTACTGAAGCGAAAGAGCGGAGTGGTGCGCTTATT
ACGATAGATCACGCACTAGAACAAAATCGCAATGTGTATGTATTACCCGGTGATATGTATAATCCATTTACAAAGGGGAA
TTTATTGAGAATTCAAGAAGGTGCAGAAGTCGTCTTGTCAGAAAATGATATTTTGAAGGATTATTGTCAGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.613

98.966

0.521
  dprA Staphylococcus aureus N315

52.613

98.966

0.521

Multiple sequence alignment