Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   CKW36_RS19180 Genome accession   NZ_LT906461
Coordinates   4085467..4086657 (-) Length   396 a.a.
NCBI ID   WP_032959911.1    Uniprot ID   -
Organism   Bordetella hinzii strain NCTC13200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4080467..4091657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW36_RS19160 (SAMEA4040645_03843) phnC 4081246..4082016 (+) 771 WP_029578354.1 phosphonate ABC transporter ATP-binding protein -
  CKW36_RS19165 (SAMEA4040645_03844) phnE 4082004..4082867 (+) 864 WP_029578353.1 phosphonate ABC transporter, permease protein PhnE -
  CKW36_RS19170 (SAMEA4040645_03845) phnE 4082864..4083685 (+) 822 WP_029578352.1 phosphonate ABC transporter, permease protein PhnE -
  CKW36_RS19175 (SAMEA4040645_03846) - 4083873..4085456 (+) 1584 WP_029578351.1 CYTH and CHAD domain-containing protein -
  CKW36_RS19180 (SAMEA4040645_03847) pilA 4085467..4086657 (-) 1191 WP_032959911.1 signal recognition particle-docking protein FtsY Machinery gene
  CKW36_RS19185 (SAMEA4040645_03848) rsmD 4086730..4087350 (+) 621 WP_029578349.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CKW36_RS19190 (SAMEA4040645_03849) coaD 4087374..4087886 (+) 513 WP_029578348.1 pantetheine-phosphate adenylyltransferase -
  CKW36_RS19195 (SAMEA4040645_03850) - 4087957..4088211 (+) 255 WP_029578347.1 YfhL family 4Fe-4S dicluster ferredoxin -
  CKW36_RS19200 (SAMEA4040645_03851) - 4088208..4089419 (+) 1212 WP_029578346.1 benzoate/H(+) symporter BenE family transporter -
  CKW36_RS19205 (SAMEA4040645_03852) - 4089416..4089799 (-) 384 WP_029578345.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 41162.40 Da        Isoelectric Point: 5.5257

>NTDB_id=1147670 CKW36_RS19180 WP_032959911.1 4085467..4086657(-) (pilA) [Bordetella hinzii strain NCTC13200]
MFSFFKKKTPPPAAPATPAPPPEPVVQPAEPVPPPADPSPVDAAPVEPIPAQAAPLEPAAVEPAPVAPPPVPPQAAPEPV
SEPVSEPAAAAPKKASWLSRLKQGLARTGQSLGGIFVGVKVDENLFEELESALIMADAGMEATEKLLTALRARVKKERIE
DPAQVKAALRQLLAEHLKPLERGFDLRRSQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLIE
WGSRNNVTVIAQEGGDPAAVAFDAVNAGRARGAGVVMIDTAGRLPTQLHLMEELKKIRRVIGKADAAAPHEVLLVVDGNT
GQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLEDLQPFVAEEFATALLAD

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=1147670 CKW36_RS19180 WP_032959911.1 4085467..4086657(-) (pilA) [Bordetella hinzii strain NCTC13200]
ATGTTCAGCTTCTTCAAGAAAAAGACCCCTCCGCCCGCCGCGCCGGCCACGCCCGCGCCGCCGCCGGAGCCCGTCGTCCA
GCCGGCCGAGCCCGTCCCGCCGCCGGCTGACCCGTCCCCCGTTGATGCGGCCCCCGTTGAGCCGATTCCTGCTCAAGCGG
CTCCCCTTGAACCGGCGGCCGTCGAACCGGCGCCTGTCGCCCCGCCGCCCGTGCCCCCGCAGGCCGCGCCCGAGCCGGTA
TCCGAGCCGGTATCCGAGCCGGCCGCCGCCGCGCCCAAGAAGGCGTCCTGGCTCAGCCGGCTCAAGCAGGGGCTGGCGCG
CACCGGCCAGAGCCTCGGCGGCATTTTCGTCGGCGTCAAAGTCGACGAAAACCTGTTCGAGGAGCTGGAGTCGGCCCTCA
TCATGGCCGATGCGGGCATGGAGGCCACCGAAAAACTGCTCACGGCCCTGCGCGCCCGCGTCAAGAAAGAACGCATCGAG
GATCCCGCCCAGGTCAAGGCGGCGCTGCGCCAATTGCTGGCCGAGCACCTCAAGCCGCTGGAGCGCGGCTTCGACCTGCG
GCGCAGCCAGCCCCTGGTGGTGATGATTGCCGGCGTCAACGGCGCGGGCAAGACCACCTCCATCGGCAAACTGGCCCACA
CCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCCGCGGGCGACACCTTCCGCGCCGCGGCGCGCGAGCAACTGATCGAA
TGGGGCAGCCGCAACAACGTCACCGTCATCGCCCAGGAGGGCGGCGACCCGGCGGCGGTGGCGTTTGACGCCGTCAACGC
GGGCCGCGCGCGCGGCGCCGGCGTGGTCATGATAGACACCGCGGGGCGCCTGCCGACACAGCTGCACCTGATGGAAGAGC
TCAAGAAAATCCGCCGCGTCATCGGCAAGGCCGATGCGGCCGCGCCCCATGAAGTGCTGTTGGTGGTCGACGGCAATACG
GGCCAGAACGCGCTGGCCCAGATCCGCGCCTTTGACGCCGCCATCCAGCTCACCGGCCTGGTGGTGACCAAGCTGGACGG
CACCGCCAAGGGCGGCACGCTGGCCGCGGTCGCGGCCGGCAGCCAGGGCGTGCGCCCCGTGCCGGTCTATTGGATCGGCG
TGGGCGAGGGGCTCGAAGACCTGCAGCCCTTCGTGGCCGAGGAGTTCGCCACCGCGCTGTTGGCCGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(192-394)

SRP54-type protein, helical bundle domain (SRP54_N)

(110-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.238

100

0.533

Multiple sequence alignment