Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CKV88_RS09480 | Genome accession | NZ_LT906460 |
| Coordinates | 2032781..2033176 (-) | Length | 131 a.a. |
| NCBI ID | WP_002464821.1 | Uniprot ID | G5JKX0 |
| Organism | Staphylococcus simiae strain NCTC13838 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2027781..2038176
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV88_RS09455 (SAMEA4384339_01926) | thiE | 2028031..2028675 (-) | 645 | WP_002464826.1 | thiamine phosphate synthase | - |
| CKV88_RS09460 (SAMEA4384339_01927) | thiM | 2028672..2029466 (-) | 795 | WP_002464825.1 | hydroxyethylthiazole kinase | - |
| CKV88_RS09465 (SAMEA4384339_01928) | thiD | 2029453..2030280 (-) | 828 | WP_002464824.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| CKV88_RS09470 (SAMEA4384339_01929) | tenA | 2030273..2030962 (-) | 690 | WP_002464823.1 | thiaminase II | - |
| CKV88_RS09475 (SAMEA4384339_01931) | - | 2031381..2032163 (-) | 783 | WP_002464822.1 | transglycosylase family protein | - |
| CKV88_RS09480 (SAMEA4384339_01932) | ssb | 2032781..2033176 (-) | 396 | WP_002464821.1 | single-stranded DNA-binding protein | Machinery gene |
| CKV88_RS09485 (SAMEA4384339_01933) | - | 2033370..2033810 (+) | 441 | WP_002464820.1 | YwpF-like family protein | - |
| CKV88_RS09490 (SAMEA4384339_01934) | fabZ | 2033863..2034303 (-) | 441 | WP_002464819.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| CKV88_RS09495 (SAMEA4384339_01935) | murA | 2034339..2035604 (-) | 1266 | WP_002464818.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| CKV88_RS09500 (SAMEA4384339_01936) | - | 2035723..2035956 (-) | 234 | WP_002464817.1 | DUF1146 family protein | - |
| CKV88_RS09505 (SAMEA4384339_01937) | - | 2036472..2036876 (-) | 405 | WP_002464816.1 | F0F1 ATP synthase subunit epsilon | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15064.08 Da Isoelectric Point: 5.2435
>NTDB_id=1147652 CKV88_RS09480 WP_002464821.1 2032781..2033176(-) (ssb) [Staphylococcus simiae strain NCTC13838]
MLNKIVIVGRLTKDVQIFDKEGSKIATFCVATQRNYKDENDEFVSDYIFCKAFGKLAVNIEKYTNQGSLVGITGQMRSRK
YVKDEQTHFVTELYVETIKFMSPKSKNNEILSDNAYDINSNNIDNPDFLEI
MLNKIVIVGRLTKDVQIFDKEGSKIATFCVATQRNYKDENDEFVSDYIFCKAFGKLAVNIEKYTNQGSLVGITGQMRSRK
YVKDEQTHFVTELYVETIKFMSPKSKNNEILSDNAYDINSNNIDNPDFLEI
Nucleotide
Download Length: 396 bp
>NTDB_id=1147652 CKV88_RS09480 WP_002464821.1 2032781..2033176(-) (ssb) [Staphylococcus simiae strain NCTC13838]
ATGTTAAACAAAATCGTCATAGTCGGAAGACTAACCAAAGATGTACAAATATTCGACAAGGAGGGTAGTAAAATAGCAAC
ATTTTGTGTTGCAACTCAAAGAAATTATAAAGACGAAAACGATGAGTTTGTAAGTGATTATATTTTTTGTAAAGCTTTTG
GTAAATTGGCAGTAAATATTGAAAAATATACAAACCAAGGTTCATTAGTCGGCATAACCGGCCAAATGCGCTCACGAAAA
TATGTCAAAGATGAACAAACACATTTTGTAACTGAATTATATGTTGAAACGATTAAATTTATGTCCCCTAAATCTAAAAA
TAATGAAATTCTTTCAGATAATGCTTATGATATTAACTCCAATAATATAGACAATCCTGACTTTCTAGAAATTTAA
ATGTTAAACAAAATCGTCATAGTCGGAAGACTAACCAAAGATGTACAAATATTCGACAAGGAGGGTAGTAAAATAGCAAC
ATTTTGTGTTGCAACTCAAAGAAATTATAAAGACGAAAACGATGAGTTTGTAAGTGATTATATTTTTTGTAAAGCTTTTG
GTAAATTGGCAGTAAATATTGAAAAATATACAAACCAAGGTTCATTAGTCGGCATAACCGGCCAAATGCGCTCACGAAAA
TATGTCAAAGATGAACAAACACATTTTGTAACTGAATTATATGTTGAAACGATTAAATTTATGTCCCCTAAATCTAAAAA
TAATGAAATTCTTTCAGATAATGCTTATGATATTAACTCCAATAATATAGACAATCCTGACTTTCTAGAAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
83.969 |
100 |
0.84 |
| ssb | Staphylococcus aureus MW2 |
83.206 |
100 |
0.832 |