Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CKV88_RS07290 Genome accession   NZ_LT906460
Coordinates   1589963..1591774 (-) Length   603 a.a.
NCBI ID   WP_157738309.1    Uniprot ID   -
Organism   Staphylococcus simiae strain NCTC13838     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1584963..1596774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV88_RS07275 (SAMEA4384339_01475) lepA 1586371..1588194 (-) 1824 WP_095092730.1 translation elongation factor 4 -
  CKV88_RS07280 (SAMEA4384339_01476) rpsT 1588538..1588789 (+) 252 WP_095092732.1 30S ribosomal protein S20 -
  CKV88_RS07285 (SAMEA4384339_01477) holA 1588915..1589889 (-) 975 WP_095092733.1 DNA polymerase III subunit delta -
  CKV88_RS07290 (SAMEA4384339_01478) comEC 1589963..1591774 (-) 1812 WP_157738309.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CKV88_RS07295 (SAMEA4384339_01479) - 1592155..1592616 (-) 462 WP_002462164.1 ComE operon protein 2 -
  CKV88_RS07300 (SAMEA4384339_01480) - 1592708..1593367 (-) 660 WP_095092736.1 helix-hairpin-helix domain-containing protein -
  CKV88_RS07305 (SAMEA4384339_01481) - 1593421..1594137 (-) 717 WP_095092738.1 class I SAM-dependent methyltransferase -
  CKV88_RS07310 (SAMEA4384339_01482) rsfS 1594140..1594493 (-) 354 WP_002463173.1 ribosome silencing factor -
  CKV88_RS07315 (SAMEA4384339_01483) yqeK 1594494..1595078 (-) 585 WP_002463171.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  CKV88_RS07320 (SAMEA4384339_01484) - 1595068..1595637 (-) 570 WP_002463169.1 nicotinate-nucleotide adenylyltransferase -
  CKV88_RS07325 (SAMEA4384339_01485) yhbY 1595640..1595930 (-) 291 WP_002463167.1 ribosome assembly RNA-binding protein YhbY -
  CKV88_RS07330 (SAMEA4384339_01486) aroE 1595935..1596741 (-) 807 WP_095092740.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69607.33 Da        Isoelectric Point: 9.8769

>NTDB_id=1147642 CKV88_RS07290 WP_157738309.1 1589963..1591774(-) (comEC) [Staphylococcus simiae strain NCTC13838]
MIGQYYNPYPQHVALRITHIDFKSCTTTHQFNILTQYREYINNKIKYSGIKYPERIMSLINGDTTLIDDNYKDNVKNLGI
YHLLAVSGSHIAIIIFLIYQPLVRLNVPMILIKMITIVILIAFAFYTNFAPSACRAIIMAIIVMLLPKNYKVAPINILST
AFVIMFLINPLATNDIGFQFSFVISFFIIFLYPYISSLPKFKSLIALTFIAQLSSLIISIPHFNQLQWIGFFSNILFVPF
YTFILFPCTLLFYIICHFIPHISLLNVFINKIFDIHDHLLKLLLKINNFNWYIPNMSNIFYIVIIILIVLILIFLAHHLF
KYVIIFSFILLLLLNINSFQSHHRLTALNVGQGDSILFEGGSNQTMLIDTGGQYASKQHKKHLSIAKYHTLPVLKQRGIN
KLNYLVLTHPHQDHIGELPFISSHIKIEKIIINSRGYPKETLKNIMSLCDKYNIQLLDVENVTNINFKDATIHFLNGYIY
RSDDKNEYSIVTLIKYHNINILLMGDATKNNEKLLLKKYNLPKIDILKVGHHGSKTSSSESFIRKIQPTISLISSGKHNR
YHLPNKEVIMLLKSIKSKIYNTQQSGQITIDLDKNFEIQQQAS

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1147642 CKV88_RS07290 WP_157738309.1 1589963..1591774(-) (comEC) [Staphylococcus simiae strain NCTC13838]
GTGATAGGTCAATATTATAATCCTTATCCACAGCATGTTGCTTTAAGAATTACTCATATTGATTTTAAGAGTTGTACCAC
AACCCATCAATTCAATATATTAACGCAATATAGAGAGTATATTAATAACAAAATAAAATATTCTGGCATTAAATATCCTG
AACGTATAATGAGTCTGATAAATGGTGATACCACTTTAATAGATGACAATTATAAAGATAATGTTAAAAATTTAGGAATA
TATCATTTATTAGCAGTCAGTGGATCACATATTGCGATTATTATTTTTTTAATTTATCAACCATTAGTTAGATTAAATGT
TCCCATGATACTCATTAAGATGATAACGATCGTAATACTCATAGCTTTTGCATTTTATACAAATTTTGCTCCAAGTGCTT
GTCGCGCAATCATTATGGCTATTATTGTTATGCTATTACCTAAAAATTATAAAGTGGCTCCCATCAATATTTTATCCACT
GCCTTTGTGATCATGTTCTTAATCAATCCTTTAGCAACAAACGATATAGGCTTTCAATTTTCTTTTGTCATATCATTTTT
TATTATCTTTTTATATCCGTATATTTCAAGTTTACCGAAATTTAAATCACTTATTGCATTAACTTTTATTGCTCAACTAT
CCTCATTAATTATTTCAATTCCTCATTTTAATCAACTACAATGGATTGGTTTCTTTTCTAACATCTTATTTGTACCATTT
TACACCTTTATTTTATTTCCATGTACATTATTATTTTATATTATTTGCCATTTTATCCCACATATATCTCTGCTAAACGT
ATTTATAAATAAAATTTTTGATATTCATGATCATTTATTAAAACTACTACTAAAAATCAATAATTTTAATTGGTATATAC
CAAATATGAGTAATATTTTTTATATTGTTATTATAATATTGATAGTGCTAATTTTAATATTTTTGGCTCATCATTTATTT
AAATATGTCATAATATTTTCGTTCATATTATTACTACTTTTAAATATTAATAGTTTTCAAAGTCATCACCGGCTAACTGC
GTTAAATGTAGGACAAGGTGATAGTATTTTATTTGAAGGTGGAAGTAATCAGACTATGCTCATTGATACAGGAGGACAGT
ATGCCTCAAAACAGCATAAAAAACATTTGTCGATAGCAAAATATCATACTTTACCAGTGTTAAAGCAACGCGGTATTAAT
AAATTGAATTATTTAGTATTAACTCATCCTCATCAAGATCATATAGGTGAGTTACCTTTTATTAGTAGTCATATAAAAAT
TGAAAAGATTATCATAAATAGTAGAGGTTATCCAAAAGAAACTTTAAAAAATATCATGAGTTTATGTGATAAATATAATA
TCCAATTATTAGATGTTGAGAATGTGACGAATATAAATTTTAAGGATGCTACTATTCATTTTTTAAATGGTTATATTTAT
AGAAGTGACGATAAAAATGAATATTCTATAGTAACATTAATTAAGTACCATAATATTAATATTTTATTAATGGGGGATGC
TACAAAGAATAATGAAAAGCTATTATTAAAAAAATATAATTTACCTAAAATTGATATTTTAAAAGTAGGTCATCATGGTA
GTAAAACGAGTAGCAGTGAAAGTTTTATTAGAAAGATACAACCTACTATTAGCTTAATATCATCTGGTAAACATAATAGG
TATCATTTGCCTAATAAAGAAGTGATAATGCTATTGAAAAGTATTAAAAGTAAAATTTATAATACTCAACAATCTGGTCA
AATCACGATTGATTTAGATAAAAATTTTGAAATACAACAACAAGCATCTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(59-315)

Metallo-beta-lactamase superfamily (Lactamase_B)

(350-555)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

52.326

99.834

0.522
  comEC Staphylococcus aureus MW2

52.5

99.502

0.522

Multiple sequence alignment