Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | CKV88_RS05565 | Genome accession | NZ_LT906460 |
| Coordinates | 1195867..1196742 (+) | Length | 291 a.a. |
| NCBI ID | WP_002465076.1 | Uniprot ID | G5JLM6 |
| Organism | Staphylococcus simiae strain NCTC13838 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1160175..1216813 | 1195867..1196742 | within | 0 |
Gene organization within MGE regions
Location: 1160175..1216813
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV88_RS05420 (SAMEA4384339_01104) | rlmN | 1161222..1162316 (+) | 1095 | WP_002462584.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| CKV88_RS05425 (SAMEA4384339_01105) | - | 1162323..1163066 (+) | 744 | WP_002462583.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| CKV88_RS05430 (SAMEA4384339_01106) | pknB | 1163063..1165087 (+) | 2025 | WP_002462582.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| CKV88_RS05435 (SAMEA4384339_01107) | rsgA | 1165925..1166800 (+) | 876 | WP_002464552.1 | ribosome small subunit-dependent GTPase A | - |
| CKV88_RS05440 (SAMEA4384339_01108) | rpe | 1166801..1167448 (+) | 648 | WP_002464551.1 | ribulose-phosphate 3-epimerase | - |
| CKV88_RS05445 (SAMEA4384339_01109) | - | 1167451..1168095 (+) | 645 | WP_002464550.1 | thiamine diphosphokinase | - |
| CKV88_RS05450 (SAMEA4384339_01110) | rpmB | 1168458..1168646 (-) | 189 | WP_000517908.1 | 50S ribosomal protein L28 | - |
| CKV88_RS05455 (SAMEA4384339_01111) | - | 1169116..1169490 (+) | 375 | WP_002464549.1 | Asp23/Gls24 family envelope stress response protein | - |
| CKV88_RS05460 (SAMEA4384339_01112) | fakA | 1169505..1171151 (+) | 1647 | WP_002464548.1 | fatty acid kinase catalytic subunit FakA | - |
| CKV88_RS05465 (SAMEA4384339_01113) | recG | 1171589..1173649 (+) | 2061 | WP_002462387.1 | ATP-dependent DNA helicase RecG | - |
| CKV88_RS05470 (SAMEA4384339_01114) | fapR | 1174003..1174569 (+) | 567 | WP_088177449.1 | transcription factor FapR | - |
| CKV88_RS05475 (SAMEA4384339_01115) | plsX | 1174581..1175567 (+) | 987 | WP_002462385.1 | phosphate acyltransferase PlsX | - |
| CKV88_RS05480 (SAMEA4384339_01116) | fabD | 1175560..1176486 (+) | 927 | WP_002462384.1 | ACP S-malonyltransferase | - |
| CKV88_RS05485 (SAMEA4384339_01117) | fabG | 1176479..1177216 (+) | 738 | WP_002462382.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| CKV88_RS05490 (SAMEA4384339_01118) | - | 1177512..1177745 (+) | 234 | WP_002462381.1 | acyl carrier protein | - |
| CKV88_RS05495 (SAMEA4384339_01119) | rnc | 1177861..1178592 (+) | 732 | WP_002462380.1 | ribonuclease III | - |
| CKV88_RS05500 (SAMEA4384339_01120) | smc | 1178937..1182503 (+) | 3567 | WP_002462379.1 | chromosome segregation protein SMC | - |
| CKV88_RS05505 (SAMEA4384339_01121) | ftsY | 1182503..1183732 (+) | 1230 | WP_002462378.1 | signal recognition particle-docking protein FtsY | - |
| CKV88_RS05510 (SAMEA4384339_01122) | - | 1183719..1184051 (+) | 333 | WP_002462375.1 | putative DNA-binding protein | - |
| CKV88_RS05515 (SAMEA4384339_01123) | ffh | 1184072..1185439 (+) | 1368 | WP_002462373.1 | signal recognition particle protein | - |
| CKV88_RS05520 (SAMEA4384339_01124) | rpsP | 1185586..1185861 (+) | 276 | WP_002462372.1 | 30S ribosomal protein S16 | - |
| CKV88_RS05525 (SAMEA4384339_01125) | rimM | 1186489..1186992 (+) | 504 | WP_002465084.1 | ribosome maturation factor RimM | - |
| CKV88_RS05530 (SAMEA4384339_01126) | trmD | 1186992..1187729 (+) | 738 | WP_002465083.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| CKV88_RS05535 (SAMEA4384339_01127) | rplS | 1187833..1188183 (+) | 351 | WP_002465082.1 | 50S ribosomal protein L19 | - |
| CKV88_RS05540 (SAMEA4384339_01128) | - | 1188378..1190999 (-) | 2622 | WP_002465081.1 | YfhO family protein | - |
| CKV88_RS05545 (SAMEA4384339_01129) | ylqF | 1191430..1192314 (+) | 885 | WP_002465080.1 | ribosome biogenesis GTPase YlqF | - |
| CKV88_RS05550 (SAMEA4384339_01130) | - | 1192298..1193083 (+) | 786 | WP_002465079.1 | ribonuclease HII | - |
| CKV88_RS05555 (SAMEA4384339_01131) | sucC | 1193236..1194402 (+) | 1167 | WP_002465078.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| CKV88_RS05560 (SAMEA4384339_01132) | sucD | 1194424..1195332 (+) | 909 | WP_002465077.1 | succinate--CoA ligase subunit alpha | - |
| CKV88_RS05565 (SAMEA4384339_01133) | dprA | 1195867..1196742 (+) | 876 | WP_002465076.1 | DNA-processing protein DprA | Machinery gene |
| CKV88_RS05570 (SAMEA4384339_01134) | topA | 1196920..1198995 (+) | 2076 | WP_197697110.1 | type I DNA topoisomerase | - |
| CKV88_RS05575 (SAMEA4384339_01135) | trmFO | 1199191..1200498 (+) | 1308 | WP_002462114.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| CKV88_RS05580 (SAMEA4384339_01136) | xerC | 1201114..1202007 (+) | 894 | WP_002462112.1 | tyrosine recombinase XerC | - |
| CKV88_RS05585 (SAMEA4384339_01137) | hslV | 1202007..1202552 (+) | 546 | WP_002462110.1 | ATP-dependent protease subunit HslV | - |
| CKV88_RS05590 (SAMEA4384339_01138) | hslU | 1202610..1204013 (+) | 1404 | WP_002462109.1 | ATP-dependent protease ATPase subunit HslU | - |
| CKV88_RS05595 (SAMEA4384339_01139) | codY | 1204035..1204808 (+) | 774 | WP_002462108.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| CKV88_RS05600 (SAMEA4384339_01140) | rpsB | 1205041..1205808 (+) | 768 | WP_002462106.1 | 30S ribosomal protein S2 | - |
| CKV88_RS05605 (SAMEA4384339_01141) | tsf | 1206090..1206971 (+) | 882 | WP_002462105.1 | translation elongation factor Ts | - |
| CKV88_RS05610 (SAMEA4384339_01142) | pyrH | 1207106..1207828 (+) | 723 | WP_002462103.1 | UMP kinase | - |
| CKV88_RS05615 (SAMEA4384339_01143) | frr | 1207848..1208402 (+) | 555 | WP_095092672.1 | ribosome recycling factor | - |
| CKV88_RS05620 (SAMEA4384339_01144) | - | 1208737..1209507 (+) | 771 | WP_002464269.1 | isoprenyl transferase | - |
| CKV88_RS05625 (SAMEA4384339_01145) | - | 1209514..1210296 (+) | 783 | WP_002464268.1 | phosphatidate cytidylyltransferase | - |
| CKV88_RS05630 (SAMEA4384339_01146) | rseP | 1210591..1211877 (+) | 1287 | WP_002464267.1 | RIP metalloprotease RseP | - |
| CKV88_RS05635 (SAMEA4384339_01147) | - | 1211900..1213603 (+) | 1704 | WP_002464266.1 | proline--tRNA ligase | - |
Sequence
Protein
Download Length: 291 a.a. Molecular weight: 33798.85 Da Isoelectric Point: 8.0187
>NTDB_id=1147633 CKV88_RS05565 WP_002465076.1 1195867..1196742(+) (dprA) [Staphylococcus simiae strain NCTC13838]
MKDLEQSLLKLVWQQFSTTQIHHLLRQFPTFLTADHYEQCYMLEQFKYISTKSNLQFKLQMFKRTSTDEIMTYFQQLNIN
YLSIFNDAYPHFLKQIYDFPFVLFYQGQLQILQHYNTLAIIGSRQAGSYTKNVLNHFFPEFANHQLTIVSGLAIGADSFA
HQFALKHHLPTVAVLAFGHEHHYPNETLLLRQQIAEQGIVISEYMPKSSIAKYRFPERNRLISGLSKGIFITEAKERSGS
HITIDCALEQNRNVYVLPGSIFNPLTRGNLLKIQEGAKVVIDVKDIIEDYL
MKDLEQSLLKLVWQQFSTTQIHHLLRQFPTFLTADHYEQCYMLEQFKYISTKSNLQFKLQMFKRTSTDEIMTYFQQLNIN
YLSIFNDAYPHFLKQIYDFPFVLFYQGQLQILQHYNTLAIIGSRQAGSYTKNVLNHFFPEFANHQLTIVSGLAIGADSFA
HQFALKHHLPTVAVLAFGHEHHYPNETLLLRQQIAEQGIVISEYMPKSSIAKYRFPERNRLISGLSKGIFITEAKERSGS
HITIDCALEQNRNVYVLPGSIFNPLTRGNLLKIQEGAKVVIDVKDIIEDYL
Nucleotide
Download Length: 876 bp
>NTDB_id=1147633 CKV88_RS05565 WP_002465076.1 1195867..1196742(+) (dprA) [Staphylococcus simiae strain NCTC13838]
ATGAAAGATTTAGAACAAAGTCTGCTGAAATTAGTATGGCAACAATTTTCTACTACTCAAATTCACCATTTACTTCGACA
ATTCCCCACTTTTTTAACTGCAGATCATTATGAACAATGCTATATGCTTGAACAATTTAAATATATTTCAACTAAAAGCA
ATTTACAGTTTAAACTTCAAATGTTTAAAAGGACCTCAACAGATGAAATTATGACATATTTTCAACAATTGAATATCAAT
TATCTCTCCATATTTAATGATGCCTATCCTCATTTTTTAAAACAAATTTATGATTTCCCATTTGTACTTTTTTATCAAGG
TCAACTTCAAATATTGCAACATTATAATACATTGGCAATTATAGGTTCTAGACAAGCTGGTTCGTATACGAAAAATGTGT
TAAATCACTTTTTTCCAGAATTCGCTAATCATCAACTTACTATTGTTTCTGGTTTAGCAATAGGAGCTGATAGTTTTGCA
CATCAATTTGCACTTAAGCATCATTTGCCAACAGTAGCAGTTTTAGCTTTTGGCCATGAACATCATTATCCCAATGAAAC
TTTGTTATTAAGACAACAGATTGCTGAACAAGGTATTGTAATAAGTGAGTACATGCCTAAAAGTTCAATTGCAAAATATA
GGTTTCCAGAACGAAATCGTTTAATTAGTGGTTTATCAAAGGGTATTTTTATTACAGAAGCGAAAGAGCGTAGTGGGAGT
CATATCACTATCGATTGTGCACTTGAACAAAATAGAAATGTTTATGTCTTGCCTGGTTCTATTTTTAATCCTTTAACTAG
AGGTAATTTATTAAAGATTCAAGAAGGTGCGAAAGTAGTTATAGATGTAAAAGATATCATTGAAGATTATCTATAA
ATGAAAGATTTAGAACAAAGTCTGCTGAAATTAGTATGGCAACAATTTTCTACTACTCAAATTCACCATTTACTTCGACA
ATTCCCCACTTTTTTAACTGCAGATCATTATGAACAATGCTATATGCTTGAACAATTTAAATATATTTCAACTAAAAGCA
ATTTACAGTTTAAACTTCAAATGTTTAAAAGGACCTCAACAGATGAAATTATGACATATTTTCAACAATTGAATATCAAT
TATCTCTCCATATTTAATGATGCCTATCCTCATTTTTTAAAACAAATTTATGATTTCCCATTTGTACTTTTTTATCAAGG
TCAACTTCAAATATTGCAACATTATAATACATTGGCAATTATAGGTTCTAGACAAGCTGGTTCGTATACGAAAAATGTGT
TAAATCACTTTTTTCCAGAATTCGCTAATCATCAACTTACTATTGTTTCTGGTTTAGCAATAGGAGCTGATAGTTTTGCA
CATCAATTTGCACTTAAGCATCATTTGCCAACAGTAGCAGTTTTAGCTTTTGGCCATGAACATCATTATCCCAATGAAAC
TTTGTTATTAAGACAACAGATTGCTGAACAAGGTATTGTAATAAGTGAGTACATGCCTAAAAGTTCAATTGCAAAATATA
GGTTTCCAGAACGAAATCGTTTAATTAGTGGTTTATCAAAGGGTATTTTTATTACAGAAGCGAAAGAGCGTAGTGGGAGT
CATATCACTATCGATTGTGCACTTGAACAAAATAGAAATGTTTATGTCTTGCCTGGTTCTATTTTTAATCCTTTAACTAG
AGGTAATTTATTAAAGATTCAAGAAGGTGCGAAAGTAGTTATAGATGTAAAAGATATCATTGAAGATTATCTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus MW2 |
53.147 |
98.282 |
0.522 |
| dprA | Staphylococcus aureus N315 |
53.147 |
98.282 |
0.522 |