Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CKW05_RS11095 Genome accession   NZ_LT906457
Coordinates   2464351..2464977 (+) Length   208 a.a.
NCBI ID   WP_231950465.1    Uniprot ID   -
Organism   Legionella spiritensis strain NCTC11990     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2459351..2469977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW05_RS11075 (SAMEA4412668_02210) letA 2460324..2460975 (-) 652 Protein_2116 two-component system response regulator LetA -
  CKW05_RS11080 (SAMEA4412668_02211) phhA 2461061..2461879 (-) 819 WP_058482117.1 phenylalanine 4-monooxygenase -
  CKW05_RS11085 (SAMEA4412668_02212) - 2461931..2463178 (-) 1248 WP_065238350.1 sterol desaturase family protein -
  CKW05_RS11090 (SAMEA4412668_02213) bioC 2463373..2464221 (-) 849 WP_058482213.1 malonyl-ACP O-methyltransferase BioC -
  CKW05_RS11095 (SAMEA4412668_02214) comFC 2464351..2464977 (+) 627 WP_231950465.1 ComF family protein Machinery gene
  CKW05_RS11100 (SAMEA4412668_02215) - 2464965..2466038 (-) 1074 WP_058482116.1 RIP metalloprotease -
  CKW05_RS11105 (SAMEA4412668_02216) - 2466052..2466330 (-) 279 WP_058482115.1 hypothetical protein -
  CKW05_RS11110 (SAMEA4412668_02217) hemA 2466550..2467824 (+) 1275 WP_058482114.1 glutamyl-tRNA reductase -
  CKW05_RS11115 (SAMEA4412668_02218) prfA 2467808..2468896 (+) 1089 WP_058482113.1 peptide chain release factor 1 -
  CKW05_RS11120 (SAMEA4412668_02219) prmC 2468889..2469755 (+) 867 WP_058482112.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23784.84 Da        Isoelectric Point: 10.0858

>NTDB_id=1147580 CKW05_RS11095 WP_231950465.1 2464351..2464977(+) (comFC) [Legionella spiritensis strain NCTC11990]
MCRTCEGLLTRIDHPCRYCGLPLIDESFAVCGHCVKQRPAFDKVLTAYRFEGALRTLLHDYKYGQTLAIRTFLAKLMLDA
LPRQPYKPDCLIPVPLHLKRLRQRGFNQAVELAKLLAGQLNIPCYRTLCRKTINTPAQVGLSSQQRRKNLRHSFTIGPHN
FQHVTLVDDLLTTGSTASELARQFKKQGVRRVDVWCCARTAERSCYPR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1147580 CKW05_RS11095 WP_231950465.1 2464351..2464977(+) (comFC) [Legionella spiritensis strain NCTC11990]
GTGTGCCGAACCTGTGAAGGGTTATTGACACGCATCGACCACCCATGTCGATATTGCGGGCTGCCCCTGATTGATGAATC
ATTTGCAGTATGTGGCCATTGTGTCAAACAGCGCCCGGCCTTTGATAAGGTTCTGACGGCGTATCGTTTTGAAGGGGCGT
TGCGCACTCTCCTCCATGATTATAAATACGGCCAGACTCTGGCTATACGCACGTTTCTGGCCAAACTGATGCTGGACGCC
TTGCCTCGGCAACCTTATAAACCTGATTGTCTGATTCCGGTACCTCTCCACCTCAAACGACTACGGCAGCGAGGTTTTAA
TCAAGCCGTCGAGTTAGCCAAACTGTTAGCCGGACAACTGAATATACCCTGTTACCGCACTCTGTGCCGCAAAACCATCA
ACACGCCGGCGCAAGTTGGGTTAAGCAGCCAACAGCGCCGCAAAAATCTGCGCCACTCCTTTACTATAGGGCCGCATAAC
TTTCAGCACGTCACTCTGGTAGATGACTTGTTAACAACCGGTAGTACCGCCAGCGAACTGGCCCGGCAATTTAAAAAACA
GGGCGTACGGCGTGTCGATGTCTGGTGTTGCGCGAGAACTGCTGAAAGGTCCTGTTATCCCAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

51.961

98.077

0.51
  comFC Legionella pneumophila strain ERS1305867

55.026

90.865

0.5

Multiple sequence alignment