Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CKV75_RS05195 Genome accession   NZ_LT906456
Coordinates   1135512..1136891 (+) Length   459 a.a.
NCBI ID   WP_014991736.1    Uniprot ID   A0A9X4JCG7
Organism   Actinobacillus suis strain NCTC12996     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1130512..1141891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV75_RS05165 (SAMEA4504061_01065) yacG 1130799..1130987 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  CKV75_RS05170 (SAMEA4504061_01066) coaE 1130969..1131607 (-) 639 WP_014991731.1 dephospho-CoA kinase -
  CKV75_RS05175 (SAMEA4504061_01067) - 1131629..1132303 (-) 675 WP_014991732.1 fimbrial protein -
  CKV75_RS05180 (SAMEA4504061_01068) - 1132303..1133496 (-) 1194 WP_014991733.1 type II secretion system F family protein -
  CKV75_RS05185 (SAMEA4504061_01069) pilB 1133489..1134874 (-) 1386 WP_014991734.1 GspE/PulE family protein Machinery gene
  CKV75_RS05190 (SAMEA4504061_01070) pilA 1134895..1135332 (-) 438 WP_014991735.1 pilin Machinery gene
  CKV75_RS05195 (SAMEA4504061_01071) radA 1135512..1136891 (+) 1380 WP_014991736.1 DNA repair protein RadA Machinery gene
  CKV75_RS05200 (SAMEA4504061_01072) pepB 1136957..1138240 (+) 1284 WP_014991737.1 aminopeptidase PepB -
  CKV75_RS05205 (SAMEA4504061_01073) - 1138368..1139303 (+) 936 WP_014991738.1 KpsF/GutQ family sugar-phosphate isomerase -
  CKV75_RS05210 (SAMEA4504061_01074) greB 1139313..1139801 (+) 489 WP_014991739.1 transcription elongation factor GreB -
  CKV75_RS05215 (SAMEA4504061_01075) ribE 1139892..1140353 (-) 462 WP_005596393.1 6,7-dimethyl-8-ribityllumazine synthase -
  CKV75_RS05220 (SAMEA4504061_01076) - 1140464..1141669 (-) 1206 WP_014991740.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49682.38 Da        Isoelectric Point: 7.9500

>NTDB_id=1147540 CKV75_RS05195 WP_014991736.1 1135512..1136891(+) (radA) [Actinobacillus suis strain NCTC12996]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1147540 CKV75_RS05195 WP_014991736.1 1135512..1136891(+) (radA) [Actinobacillus suis strain NCTC12996]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGTGGCGCAGAATATTCTCGCTGGATGGGTCAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATTTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGTGGCT
ATGCTGGAGAGACTTCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGCGTACTCGGCGGTGGTGTCGTGCCCGGTTCTGCTATTCTCATCGGGGGGCATCCTGGTGCGGGAAA
ATCAACCCTATTACTGCAAGTAATGTGTGGCTTATCAAAAATGCTACCGACGCTCTATGTCACTGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAACCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGTGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTAGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTTGGTGCGGTAAATGAACTTGG
TGTATTTGCTATGACTGAACAAGGTTTACGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTACTTTGGGAAGGAACTCGCCCATTATTAGTCGAAATTCAAGCGCTGGTTGATCATTCT
ATGTTAGCTAATCCACGCCGTGTGGCGGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCAGTGCTTCATCGCCA
TGGCGGACTGCAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTTGGGGGCGTAAAAGTCACAGAAACCAGTGCCGATC
TTGCTTTAATTTTGGCACTGATCTCAAGTTTTAGAAATCGCCCGTTACCACAGGACTTAGTAATTTTTGGTGAAGTAGGA
CTTGCCGGCGAAATTCGTCCGGTGCCGAGTGGTCAAGAACGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGAGCAAT
CGTGCCATTTGGTAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCGCTAG
ATGCGCTTGGTAATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

99.564

0.488
  radA Streptococcus mitis NCTC 12261

44.835

99.129

0.444
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442

Multiple sequence alignment