Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | CKV75_RS00480 | Genome accession | NZ_LT906456 |
| Coordinates | 86640..87188 (+) | Length | 182 a.a. |
| NCBI ID | WP_014990914.1 | Uniprot ID | K0FV81 |
| Organism | Actinobacillus suis strain NCTC12996 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 81640..92188
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV75_RS00450 (SAMEA4504061_00090) | gltX | 83058..84497 (-) | 1440 | WP_039194773.1 | glutamate--tRNA ligase | - |
| CKV75_RS00475 (SAMEA4504061_00095) | - | 85404..86585 (+) | 1182 | WP_014990913.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| CKV75_RS00480 (SAMEA4504061_00096) | pilF | 86640..87188 (+) | 549 | WP_014990914.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| CKV75_RS00485 (SAMEA4504061_00097) | - | 87264..89603 (+) | 2340 | WP_014990915.1 | Tex family protein | - |
| CKV75_RS00490 (SAMEA4504061_00098) | - | 90005..90292 (+) | 288 | WP_014990916.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| CKV75_RS00495 (SAMEA4504061_00099) | - | 90292..90714 (+) | 423 | WP_014990917.1 | type II toxin-antitoxin system VapC family toxin | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20655.44 Da Isoelectric Point: 6.9477
>NTDB_id=1147532 CKV75_RS00480 WP_014990914.1 86640..87188(+) (pilF) [Actinobacillus suis strain NCTC12996]
MNLAKFLRNLTACMLLPVLFGCSSLLPPPQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVQSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
MNLAKFLRNLTACMLLPVLFGCSSLLPPPQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVQSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=1147532 CKV75_RS00480 WP_014990914.1 86640..87188(+) (pilF) [Actinobacillus suis strain NCTC12996]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTACCTGTGTTGTTCGGTTGTTCTTCTCTGCTTCC
TCCCCCCCAAACCACTTTTAATCGTTCAGAAGCAGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGTTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTATTATCAACAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATACCAACAATTTGAGCAAGCGG
TGCAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTAGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTGCGTTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTACCTGTGTTGTTCGGTTGTTCTTCTCTGCTTCC
TCCCCCCCAAACCACTTTTAATCGTTCAGAAGCAGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGTTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTATTATCAACAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATACCAACAATTTGAGCAAGCGG
TGCAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTAGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTGCGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
66.489 |
100 |
0.687 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.108 |
91.758 |
0.423 |