Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CKV84_RS14155 Genome accession   NZ_LT906452
Coordinates   3095785..3096444 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11985     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3090785..3101444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS14140 (SAMEA4040028_02808) - 3091459..3092118 (+) 660 WP_011947560.1 hypothetical protein -
  CKV84_RS14145 (SAMEA4040028_02809) lcl 3092286..3093893 (+) 1608 WP_014842692.1 collagen-like adhesin Lcl -
  CKV84_RS14150 (SAMEA4040028_02810) uvrC 3093917..3095773 (-) 1857 WP_014842693.1 excinuclease ABC subunit UvrC -
  CKV84_RS14155 (SAMEA4040028_02811) letA 3095785..3096444 (-) 660 WP_011216518.1 two-component system response regulator LetA Regulator
  CKV84_RS14160 (SAMEA4040028_02812) phhA 3096569..3097387 (-) 819 WP_014842694.1 phenylalanine 4-monooxygenase -
  CKV84_RS14165 (SAMEA4040028_02813) - 3097827..3098924 (+) 1098 WP_014842695.1 competence/damage-inducible protein A -
  CKV84_RS14170 (SAMEA4040028_02814) cgtA 3098883..3099908 (-) 1026 WP_014842696.1 Obg family GTPase CgtA -
  CKV84_RS14175 (SAMEA4040028_02815) rpmA 3100123..3100401 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  CKV84_RS14180 (SAMEA4040028_02816) rplU 3100414..3100725 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=1147453 CKV84_RS14155 WP_011216518.1 3095785..3096444(-) (letA) [Legionella pneumophila strain NCTC11985]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1147453 CKV84_RS14155 WP_011216518.1 3095785..3096444(-) (letA) [Legionella pneumophila strain NCTC11985]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCCTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGCGCTATGGGATACCTTACTAAAGAGTCCGG
GGCTGAAGAAATGGCTGCCGCAATTCGTAAAGTGGCCAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCGGATAGATTATTTTTAAGTAGTAAAACTATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995

Multiple sequence alignment