Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CKV84_RS12170 Genome accession   NZ_LT906452
Coordinates   2673745..2674449 (+) Length   234 a.a.
NCBI ID   WP_370695942.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11985     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2668745..2679449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS12145 (SAMEA4040028_02412) - 2669976..2670854 (+) 879 WP_014842287.1 lpg2327 family Dot/Icm T4SS effector -
  CKV84_RS12150 (SAMEA4040028_02413) lem22 2671119..2671502 (+) 384 WP_014842288.1 Dot/Icm T4SS effector Lem22 -
  CKV84_RS12155 (SAMEA4040028_02414) - 2671696..2671926 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  CKV84_RS12160 (SAMEA4040028_02415) - 2671907..2672803 (+) 897 WP_027220505.1 polyprenyl synthetase family protein -
  CKV84_RS12165 (SAMEA4040028_02416) bioC 2672847..2673701 (-) 855 WP_014842290.1 malonyl-ACP O-methyltransferase BioC -
  CKV84_RS12170 (SAMEA4040028_02417) comFC 2673745..2674449 (+) 705 WP_370695942.1 ComF family protein Machinery gene
  CKV84_RS12175 (SAMEA4040028_02418) - 2674478..2675551 (-) 1074 WP_011947177.1 M50 family metallopeptidase -
  CKV84_RS12180 (SAMEA4040028_02419) - 2675608..2675886 (-) 279 WP_010948040.1 hypothetical protein -
  CKV84_RS16290 (SAMEA4040028_02420) - 2675925..2676080 (+) 156 WP_172407379.1 hypothetical protein -
  CKV84_RS12185 (SAMEA4040028_02421) hemA 2676204..2677478 (+) 1275 WP_027220506.1 glutamyl-tRNA reductase -
  CKV84_RS12190 (SAMEA4040028_02422) prfA 2677462..2678550 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  CKV84_RS12195 (SAMEA4040028_02423) prmC 2678543..2679406 (+) 864 WP_014842294.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26783.35 Da        Isoelectric Point: 9.1564

>NTDB_id=1147449 CKV84_RS12170 WP_370695942.1 2673745..2674449(+) (comFC) [Legionella pneumophila strain NCTC11985]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLDALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVSPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARTVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1147449 CKV84_RS12170 WP_370695942.1 2673745..2674449(+) (comFC) [Legionella pneumophila strain NCTC11985]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAGCTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAACCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTGATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GAGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGGAAAAATTTACGTCATGCTTTTTATGTATC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGACTGTAACTAAAAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

98.291

100

0.983
  comFC Legionella pneumophila strain ERS1305867

97.959

83.761

0.821

Multiple sequence alignment