Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   CKV78_RS00780 Genome accession   NZ_LT906448
Coordinates   138230..138757 (+) Length   175 a.a.
NCBI ID   WP_005765297.1    Uniprot ID   C9PMN7
Organism   Pasteurella dagmatis strain NCTC11617     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 133230..143757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV78_RS00740 (SAMEA4362423_00145) tolQ 133412..134101 (+) 690 WP_005765286.1 protein TolQ -
  CKV78_RS00745 (SAMEA4362423_00146) tolR 134176..134598 (+) 423 WP_005765289.1 colicin uptake protein TolR -
  CKV78_RS00750 (SAMEA4362423_00147) tolA 134615..135688 (+) 1074 WP_005765291.1 cell envelope integrity protein TolA -
  CKV78_RS00755 (SAMEA4362423_00148) tolB 135764..137062 (+) 1299 WP_005765293.1 Tol-Pal system beta propeller repeat protein TolB -
  CKV78_RS00760 (SAMEA4362423_00149) pal 137081..137536 (+) 456 WP_005765295.1 peptidoglycan-associated lipoprotein Pal -
  CKV78_RS00780 (SAMEA4362423_00153) comN 138230..138757 (+) 528 WP_005765297.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CKV78_RS00785 (SAMEA4362423_00154) - 138757..139461 (+) 705 WP_005765299.1 hypothetical protein -
  CKV78_RS00790 (SAMEA4362423_00155) - 139466..140161 (+) 696 WP_032855681.1 DUF2572 family protein -
  CKV78_RS00795 (SAMEA4362423_00156) comQ 140145..140447 (+) 303 WP_005765304.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 20147.42 Da        Isoelectric Point: 8.7363

>NTDB_id=1147356 CKV78_RS00780 WP_005765297.1 138230..138757(+) (comN) [Pasteurella dagmatis strain NCTC11617]
MKKGFTLLELMIALMLISALLLSIYPTWSKLGHQRILEKEQEKLALFLRQLQSRVSNSQQVWFLIASRDFLHKRWCLTAQ
MKSEQLCDCLSPQHCSSDLSAQFYYPHFPHKTMINTKNYFPFEITRLSGIRDTLSTACFTLSSNKEKVVFSLFNVGSIKL
KKAQESGACENDGED

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1147356 CKV78_RS00780 WP_005765297.1 138230..138757(+) (comN) [Pasteurella dagmatis strain NCTC11617]
GTGAAAAAAGGATTTACCTTATTGGAATTAATGATTGCGCTTATGTTGATTTCTGCTCTGTTACTTTCTATTTATCCCAC
TTGGTCAAAGTTGGGACATCAGCGTATATTAGAAAAAGAACAAGAAAAACTTGCTTTGTTTTTACGGCAATTGCAATCAA
GGGTGTCTAATTCTCAACAAGTGTGGTTTTTGATTGCAAGCCGCGATTTTTTGCATAAACGCTGGTGTTTAACCGCTCAA
ATGAAAAGTGAACAGCTTTGTGATTGTTTATCGCCACAACATTGCTCATCGGATCTTTCGGCACAGTTTTATTATCCACA
TTTCCCTCATAAGACAATGATCAATACAAAGAATTATTTCCCTTTTGAAATAACTCGGCTAAGTGGTATTCGGGATACGC
TTTCTACTGCGTGTTTTACTCTGTCATCTAATAAGGAAAAAGTTGTATTTTCTTTGTTTAATGTGGGTAGTATCAAATTG
AAGAAGGCACAAGAAAGCGGTGCTTGTGAAAATGATGGGGAGGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9PMN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

49.412

97.143

0.48

Multiple sequence alignment