Detailed information
Bioinformatically predicted
Overview
| Name | comQ | Type | Machinery gene |
| Locus tag | CKV78_RS00795 | Genome accession | NZ_LT906448 |
| Coordinates | 140145..140447 (+) | Length | 100 a.a. |
| NCBI ID | WP_005765304.1 | Uniprot ID | C9PMP0 |
| Organism | Pasteurella dagmatis strain NCTC11617 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 135145..145447
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV78_RS00755 (SAMEA4362423_00148) | tolB | 135764..137062 (+) | 1299 | WP_005765293.1 | Tol-Pal system beta propeller repeat protein TolB | - |
| CKV78_RS00760 (SAMEA4362423_00149) | pal | 137081..137536 (+) | 456 | WP_005765295.1 | peptidoglycan-associated lipoprotein Pal | - |
| CKV78_RS00780 (SAMEA4362423_00153) | comN | 138230..138757 (+) | 528 | WP_005765297.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| CKV78_RS00785 (SAMEA4362423_00154) | - | 138757..139461 (+) | 705 | WP_005765299.1 | hypothetical protein | - |
| CKV78_RS00790 (SAMEA4362423_00155) | - | 139466..140161 (+) | 696 | WP_032855681.1 | DUF2572 family protein | - |
| CKV78_RS00795 (SAMEA4362423_00156) | comQ | 140145..140447 (+) | 303 | WP_005765304.1 | DUF5374 domain-containing protein | Machinery gene |
| CKV78_RS00800 (SAMEA4362423_00157) | recC | 140518..143895 (+) | 3378 | WP_032855711.1 | exodeoxyribonuclease V subunit gamma | - |
| CKV78_RS00805 (SAMEA4362423_00158) | rimI | 143960..144403 (-) | 444 | WP_005765309.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| CKV78_RS00810 (SAMEA4362423_00159) | - | 144397..144813 (-) | 417 | WP_005765311.1 | DNA polymerase III subunit psi | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 11729.73 Da Isoelectric Point: 7.9235
>NTDB_id=1147357 CKV78_RS00795 WP_005765304.1 140145..140447(+) (comQ) [Pasteurella dagmatis strain NCTC11617]
MILTFKIYQYKGIGVVSFLVALALFSSIALSVIHWSAHHRQSMMQMYQYLQAIQIAENQKQRQFLGLDCEQQVHQNNLIF
LIECRETHISIRYQLGEITL
MILTFKIYQYKGIGVVSFLVALALFSSIALSVIHWSAHHRQSMMQMYQYLQAIQIAENQKQRQFLGLDCEQQVHQNNLIF
LIECRETHISIRYQLGEITL
Nucleotide
Download Length: 303 bp
>NTDB_id=1147357 CKV78_RS00795 WP_005765304.1 140145..140447(+) (comQ) [Pasteurella dagmatis strain NCTC11617]
ATGATTTTGACTTTTAAGATTTACCAATACAAAGGTATTGGAGTAGTTTCGTTTTTAGTAGCGTTGGCTTTATTTAGTAG
TATTGCTTTGAGTGTTATACATTGGTCCGCACATCATCGGCAAAGTATGATGCAAATGTATCAATATTTGCAGGCAATTC
AGATTGCTGAAAATCAAAAACAACGTCAATTTTTGGGACTAGATTGTGAACAACAAGTGCATCAGAACAATTTAATATTT
TTGATTGAATGCAGAGAAACGCACATTTCTATTCGTTATCAATTGGGGGAAATTACTCTGTAA
ATGATTTTGACTTTTAAGATTTACCAATACAAAGGTATTGGAGTAGTTTCGTTTTTAGTAGCGTTGGCTTTATTTAGTAG
TATTGCTTTGAGTGTTATACATTGGTCCGCACATCATCGGCAAAGTATGATGCAAATGTATCAATATTTGCAGGCAATTC
AGATTGCTGAAAATCAAAAACAACGTCAATTTTTGGGACTAGATTGTGAACAACAAGTGCATCAGAACAATTTAATATTT
TTGATTGAATGCAGAGAAACGCACATTTCTATTCGTTATCAATTGGGGGAAATTACTCTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comQ | Haemophilus influenzae Rd KW20 |
48.98 |
98 |
0.48 |