Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CKV71_RS08195 Genome accession   NZ_LT906447
Coordinates   1752300..1753196 (-) Length   298 a.a.
NCBI ID   WP_095105655.1    Uniprot ID   A0A239U7L8
Organism   Staphylococcus piscifermentans strain NCTC13836     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1747300..1758196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV71_RS08180 (SAMEA4384060_01684) xerC 1747684..1748574 (-) 891 WP_095105649.1 tyrosine recombinase XerC -
  CKV71_RS08185 (SAMEA4384060_01685) trmFO 1748697..1750007 (-) 1311 WP_095105651.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CKV71_RS08190 (SAMEA4384060_01686) topA 1750092..1752161 (-) 2070 WP_095105653.1 type I DNA topoisomerase -
  CKV71_RS08195 (SAMEA4384060_01687) dprA 1752300..1753196 (-) 897 WP_095105655.1 DNA-processing protein DprA Machinery gene
  CKV71_RS08200 (SAMEA4384060_01688) sucD 1753432..1754346 (-) 915 WP_095105657.1 succinate--CoA ligase subunit alpha -
  CKV71_RS08205 (SAMEA4384060_01689) sucC 1754367..1755533 (-) 1167 WP_095105659.1 ADP-forming succinate--CoA ligase subunit beta -
  CKV71_RS08210 (SAMEA4384060_01690) - 1755735..1756523 (-) 789 WP_095105661.1 ribonuclease HII -
  CKV71_RS08215 (SAMEA4384060_01691) ylqF 1756523..1757392 (-) 870 WP_095105663.1 ribosome biogenesis GTPase YlqF -
  CKV71_RS08220 (SAMEA4384060_01692) - 1757585..1758055 (-) 471 WP_095105665.1 GyrI-like domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 33645.48 Da        Isoelectric Point: 7.5565

>NTDB_id=1147345 CKV71_RS08195 WP_095105655.1 1752300..1753196(-) (dprA) [Staphylococcus piscifermentans strain NCTC13836]
MTQHESTLELLKLRYAGYTTQQMIRLFKFCPLFLSLTPSDKMTNLRQFTYTSKIRTPAAYLTRYSELSISTILNNLNQHG
VKYISIYDATYPCLLKEIYDPPFILFYKGNIELLQHTHYLGVVGSRQSTAYTAHALSFLFSHIPTPQLTIVSGLASGADS
EAHQSALQNHLPTIGVLAFGHAHHYPKSNLQLRNEIEEKGLTISEYIPEDEPRKYKFPERNRLISGLSQGVLITESKERS
GAQITIDLALQQNRNVYVLPGSIFQELTKGNLKRAQEGATIVLEIGDILIDYDCGNTM

Nucleotide


Download         Length: 897 bp        

>NTDB_id=1147345 CKV71_RS08195 WP_095105655.1 1752300..1753196(-) (dprA) [Staphylococcus piscifermentans strain NCTC13836]
ATGACACAACATGAATCAACTCTAGAACTCCTAAAACTCCGTTACGCTGGTTATACAACACAGCAAATGATACGGCTCTT
CAAATTCTGTCCTCTTTTTTTAAGCTTAACCCCTTCAGATAAAATGACAAATCTTCGACAATTTACTTATACAAGCAAAA
TACGAACCCCTGCAGCTTATCTCACACGCTATTCTGAACTAAGTATCTCTACTATTTTAAACAACCTCAATCAACATGGC
GTGAAATATATTTCTATCTACGATGCCACTTATCCATGCTTGTTAAAGGAAATCTATGATCCTCCGTTTATTCTTTTTTA
CAAAGGCAATATTGAATTATTACAGCATACACATTATTTAGGAGTAGTCGGCTCTAGACAATCAACAGCCTATACCGCTC
ATGCACTTTCTTTTTTATTTTCACATATTCCTACACCTCAACTTACTATTGTCTCTGGATTAGCATCCGGGGCAGACAGT
GAAGCCCATCAGTCAGCACTTCAAAATCATCTTCCTACAATCGGTGTCTTGGCATTCGGACACGCACATCACTATCCCAA
ATCGAATTTACAGCTTAGAAATGAAATAGAAGAAAAGGGTTTGACTATTAGTGAGTATATTCCTGAAGATGAACCACGCA
AATATAAATTTCCTGAAAGAAATCGGCTCATCAGCGGTCTTTCACAAGGAGTGTTGATAACTGAATCGAAAGAGAGAAGC
GGTGCACAAATTACTATTGATTTAGCATTACAGCAAAACCGCAATGTCTATGTTCTGCCTGGTAGTATTTTTCAAGAATT
GACCAAGGGGAATTTGAAACGTGCGCAAGAAGGTGCAACTATTGTGTTGGAAATTGGTGATATTTTAATAGATTATGATT
GTGGAAATACAATGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239U7L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.633

96.98

0.52
  dprA Staphylococcus aureus N315

53.633

96.98

0.52

Multiple sequence alignment