Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CKV71_RS05155 Genome accession   NZ_LT906447
Coordinates   1145267..1145896 (+) Length   209 a.a.
NCBI ID   WP_095104520.1    Uniprot ID   -
Organism   Staphylococcus piscifermentans strain NCTC13836     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140267..1150896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV71_RS05130 (SAMEA4384060_01059) - 1140981..1141967 (-) 987 WP_095104510.1 aromatic acid exporter family protein -
  CKV71_RS05135 (SAMEA4384060_01060) map 1142224..1142991 (+) 768 WP_095104512.1 type I methionyl aminopeptidase -
  CKV71_RS05140 (SAMEA4384060_01061) - 1143125..1143520 (+) 396 WP_095104514.1 hypothetical protein -
  CKV71_RS05145 (SAMEA4384060_01062) liaF 1143536..1144237 (+) 702 WP_095104516.1 cell wall-active antibiotics response protein LiaF -
  CKV71_RS05150 (SAMEA4384060_01063) vraS 1144234..1145277 (+) 1044 WP_095104518.1 sensor histidine kinase Regulator
  CKV71_RS05155 (SAMEA4384060_01064) vraR 1145267..1145896 (+) 630 WP_095104520.1 response regulator transcription factor Regulator
  CKV71_RS05160 (SAMEA4384060_01065) - 1145957..1146535 (-) 579 WP_095104522.1 carbonic anhydrase -
  CKV71_RS05165 (SAMEA4384060_01066) - 1146795..1147871 (-) 1077 WP_095104524.1 YihY/virulence factor BrkB family protein -
  CKV71_RS05170 (SAMEA4384060_01067) - 1147990..1148280 (-) 291 WP_095104526.1 YtxH domain-containing protein -
  CKV71_RS05175 (SAMEA4384060_01068) - 1148288..1148752 (-) 465 WP_095104528.1 low molecular weight protein-tyrosine-phosphatase -
  CKV71_RS05180 (SAMEA4384060_01069) - 1148988..1149194 (+) 207 WP_095104530.1 DUF1128 family protein -
  CKV71_RS05185 (SAMEA4384060_01070) - 1149233..1150471 (+) 1239 WP_095104532.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23740.30 Da        Isoelectric Point: 4.7092

>NTDB_id=1147330 CKV71_RS05155 WP_095104520.1 1145267..1145896(+) (vraR) [Staphylococcus piscifermentans strain NCTC13836]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGKSGKEAIEKAHELQPDLILMDLLMEDMDGVEATQQIKKDLPKIKVL
MLTSYIEDNEVYRALDAGVDSYILKTTSASDIAEAIRKTQHNESVFEAEVLVKMRNRMNQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1147330 CKV71_RS05155 WP_095104520.1 1145267..1145896(+) (vraR) [Staphylococcus piscifermentans strain NCTC13836]
ATGACGATTAAAGTGCTATTTGTGGATGATCATGAAATGGTTCGTATCGGCATTTCAAGTTATCTGTCAACACAACCTGA
TATTGAAGTAGTAGGGGAAGGTAAATCTGGAAAGGAAGCGATTGAAAAAGCGCATGAGCTGCAACCGGATTTAATCTTGA
TGGATTTATTGATGGAGGATATGGATGGCGTAGAAGCTACGCAACAAATAAAGAAAGACTTGCCTAAGATTAAAGTATTG
ATGTTAACGAGTTATATTGAAGATAATGAAGTTTATCGTGCTTTAGATGCAGGCGTAGACAGCTATATACTTAAAACTAC
GAGTGCAAGCGATATTGCAGAAGCAATTAGAAAGACGCAGCATAATGAATCTGTGTTTGAAGCGGAAGTGCTGGTTAAGA
TGCGCAATCGCATGAATCAACGTGCTGAGTTATACGAAATGCTCACAGAACGTGAAATGGAAATTTTATTACTGATTGCT
AAAGGTTATTCCAATCAAGAGATTGCAAGTGCATCGCATATTACAATTAAGACAGTTAAAACCCATGTGAGCAATATTTT
AAGCAAATTGGAAGTGCAAGATAGAACACAAGCTGTTATTTATGCTTTCCAACATGATTTAATCCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

91.388

100

0.914
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.373

Multiple sequence alignment