Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CKV71_RS04535 Genome accession   NZ_LT906447
Coordinates   1018015..1018452 (+) Length   145 a.a.
NCBI ID   WP_095104286.1    Uniprot ID   -
Organism   Staphylococcus piscifermentans strain NCTC13836     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1015111..1021626 1018015..1018452 within 0


Gene organization within MGE regions


Location: 1015111..1021626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV71_RS12775 (SAMEA4384060_00936) - 1015111..1015299 (+) 189 WP_095104278.1 DNA-directed RNA polymerase subunit beta -
  CKV71_RS04520 (SAMEA4384060_00938) - 1015587..1016696 (+) 1110 WP_095104280.1 RNA-guided endonuclease TnpB family protein -
  CKV71_RS04525 (SAMEA4384060_00939) fabZ 1016894..1017331 (+) 438 WP_095104282.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CKV71_RS04530 (SAMEA4384060_00940) - 1017382..1017825 (-) 444 WP_095104284.1 YwpF family protein -
  CKV71_RS04535 (SAMEA4384060_00941) ssb 1018015..1018452 (+) 438 WP_095104286.1 single-stranded DNA-binding protein Machinery gene
  CKV71_RS04540 (SAMEA4384060_00942) - 1019089..1019823 (+) 735 WP_095104288.1 transglycosylase family protein -
  CKV71_RS04545 (SAMEA4384060_00943) - 1020035..1020733 (+) 699 WP_095104290.1 transglycosylase -
  CKV71_RS04550 (SAMEA4384060_00944) - 1020955..1021626 (+) 672 WP_095104292.1 transglycosylase family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16260.09 Da        Isoelectric Point: 8.7651

>NTDB_id=1147327 CKV71_RS04535 WP_095104286.1 1018015..1018452(+) (ssb) [Staphylococcus piscifermentans strain NCTC13836]
MLNKIVIVGRLTRNPQLAEKEDSDIASFSVATERNYSYQGQNQQAVDYIFCKAFGKTAKNIAKYTKKGSLVGITGHMRSY
KYEKDKQTHFMTELVVETIKFISSPNSNENSTSNYSNIADNLEGSPALQENQLSTATQNPHTQNQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1147327 CKV71_RS04535 WP_095104286.1 1018015..1018452(+) (ssb) [Staphylococcus piscifermentans strain NCTC13836]
TTGTTAAACAAAATCGTCATTGTTGGACGTCTAACCCGTAATCCTCAACTAGCAGAAAAGGAGGATAGTGATATTGCCAG
TTTTAGTGTAGCAACTGAAAGAAATTATAGTTACCAAGGTCAGAATCAACAAGCAGTTGACTATATCTTTTGTAAAGCTT
TCGGTAAAACAGCAAAAAATATAGCTAAATACACTAAAAAAGGATCGCTAGTAGGAATAACAGGACATATGCGTTCATAT
AAATATGAAAAAGATAAGCAAACTCATTTTATGACTGAACTTGTGGTTGAAACTATTAAGTTCATATCGAGTCCCAACTC
TAATGAAAATTCCACTTCAAATTACTCAAACATAGCTGATAACTTAGAAGGAAGCCCTGCCTTACAAGAAAATCAGTTAT
CCACTGCCACTCAAAATCCTCATACACAAAACCAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

63.478

79.31

0.503
  ssb Staphylococcus aureus MW2

62.609

79.31

0.497

Multiple sequence alignment