Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CKW04_RS12600 Genome accession   NZ_LT906442
Coordinates   2735958..2736674 (+) Length   238 a.a.
NCBI ID   WP_083500045.1    Uniprot ID   -
Organism   Legionella waltersii strain NCTC13017     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2730958..2741674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW04_RS12575 (SAMEA4504053_02564) - 2732124..2733176 (+) 1053 WP_058479911.1 hypothetical protein -
  CKW04_RS12580 (SAMEA4504053_02565) - 2733388..2733771 (+) 384 WP_058479910.1 hypothetical protein -
  CKW04_RS12585 (SAMEA4504053_02566) - 2733894..2734124 (+) 231 WP_058479909.1 exodeoxyribonuclease VII small subunit -
  CKW04_RS12590 (SAMEA4504053_02567) - 2734105..2735019 (+) 915 WP_058479908.1 polyprenyl synthetase family protein -
  CKW04_RS12595 (SAMEA4504053_02568) bioC 2735064..2735918 (-) 855 WP_058479907.1 malonyl-ACP O-methyltransferase BioC -
  CKW04_RS12600 (SAMEA4504053_02569) comFC 2735958..2736674 (+) 717 WP_083500045.1 ComF family protein Machinery gene
  CKW04_RS12605 (SAMEA4504053_02571) - 2737211..2738284 (-) 1074 WP_058479906.1 RIP metalloprotease -
  CKW04_RS12610 (SAMEA4504053_02572) - 2738313..2738591 (-) 279 WP_058479905.1 hypothetical protein -
  CKW04_RS12615 (SAMEA4504053_02573) hemA 2739309..2740583 (+) 1275 WP_058479904.1 glutamyl-tRNA reductase -
  CKW04_RS12620 (SAMEA4504053_02574) prfA 2740567..2741655 (+) 1089 WP_058479903.1 peptide chain release factor 1 -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26760.70 Da        Isoelectric Point: 9.4709

>NTDB_id=1147248 CKW04_RS12600 WP_083500045.1 2735958..2736674(+) (comFC) [Legionella waltersii strain NCTC13017]
MLKKIKSITQNLRLPSICILCNQIYKSNLALCEECIKLLKKLGPKCPCCAHPLPDDIGLCGLCIQQKPHFDKVYIDYEYT
EPLRGLLHQFKYTNALYLAGFFSQLMFNSVNKATIMPQCIIPVPMHPERLKSRGFNQAVVLSKLLAKRLRIPYNLNCCKK
IKNTSAQASLSQKERLKNLKSAFSAASLEHQHVLIVDDLLTTGSTANEIAFLLKQNGVQRVDVCCPARAVKDGFNHSL

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1147248 CKW04_RS12600 WP_083500045.1 2735958..2736674(+) (comFC) [Legionella waltersii strain NCTC13017]
GTGCTTAAAAAAATCAAGAGTATAACACAGAATTTGCGTCTGCCTTCAATATGCATCCTTTGTAATCAAATTTATAAAAG
CAACTTGGCTCTATGTGAGGAGTGCATCAAACTTCTCAAGAAACTCGGCCCTAAATGCCCCTGCTGTGCCCACCCACTTC
CGGATGACATAGGACTCTGCGGTTTGTGCATTCAACAAAAACCCCATTTTGACAAAGTCTATATTGACTATGAATATACT
GAACCTTTACGAGGTCTATTGCATCAATTCAAATACACGAATGCTCTTTATCTTGCTGGTTTTTTCAGTCAATTGATGTT
TAATTCGGTCAATAAGGCGACAATAATGCCACAATGCATAATTCCAGTGCCCATGCACCCAGAACGTTTAAAATCAAGAG
GATTTAATCAAGCCGTTGTTCTAAGTAAGCTATTAGCGAAACGCCTCCGAATACCATACAATCTCAACTGTTGTAAAAAA
ATCAAAAACACCTCTGCGCAAGCAAGCCTAAGTCAAAAGGAGAGGCTGAAGAATTTGAAATCCGCATTTAGCGCTGCATC
GCTAGAACATCAGCATGTCCTCATTGTGGATGATTTATTAACCACGGGTAGTACTGCGAATGAGATTGCTTTTCTCTTAA
AGCAAAATGGGGTTCAGCGAGTTGATGTTTGCTGCCCTGCACGAGCTGTAAAAGACGGGTTTAACCATTCACTCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

59.74

97.059

0.58
  comFC Legionella pneumophila strain ERS1305867

58.549

81.092

0.475

Multiple sequence alignment