Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   CKW04_RS00780 Genome accession   NZ_LT906442
Coordinates   169195..169881 (+) Length   228 a.a.
NCBI ID   WP_058480984.1    Uniprot ID   A0A0W1A6L8
Organism   Legionella waltersii strain NCTC13017     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 164195..174881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW04_RS00760 (SAMEA4504053_00155) - 164237..166720 (+) 2484 WP_058480980.1 hypothetical protein -
  CKW04_RS00765 (SAMEA4504053_00156) dapB 166903..167634 (-) 732 WP_058480981.1 4-hydroxy-tetrahydrodipicolinate reductase -
  CKW04_RS00770 (SAMEA4504053_00157) - 167637..167837 (-) 201 WP_058480982.1 hypothetical protein -
  CKW04_RS00775 (SAMEA4504053_00158) - 167973..168851 (-) 879 WP_058480983.1 hypothetical protein -
  CKW04_RS00780 (SAMEA4504053_00159) rocC 169195..169881 (+) 687 WP_058480984.1 ProQ/FinO family protein Regulator
  CKW04_RS00785 (SAMEA4504053_00160) - 169882..170952 (+) 1071 WP_058480985.1 hypothetical protein -
  CKW04_RS00790 (SAMEA4504053_00161) - 171037..171426 (-) 390 WP_058480986.1 hypothetical protein -
  CKW04_RS00795 (SAMEA4504053_00162) pyk 171596..173026 (-) 1431 WP_058480987.1 pyruvate kinase -
  CKW04_RS00800 (SAMEA4504053_00163) - 173007..174200 (-) 1194 WP_058480988.1 phosphoglycerate kinase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25396.04 Da        Isoelectric Point: 10.3898

>NTDB_id=1147219 CKW04_RS00780 WP_058480984.1 169195..169881(+) (rocC) [Legionella waltersii strain NCTC13017]
MRTQELHPRTAVINKTQKNQAKRARSEALTWLAAKFPESFDNSLRIRPLKIGIMKDILDYADEAAAAGISKSKLREAVVV
FSRRLDYLACLKAKEMRINLFGDAVAEVTVEEAEHAALKIKKRIEKSVKNARKSMVSKSSSQQLTNDNYYGSSKGSQHEL
QDESYSTVYPLRSSAYSQQSSQTPPVNKAPAVIVKHKATKQFDPDAVARLKAKLGLSIKANETKETAE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1147219 CKW04_RS00780 WP_058480984.1 169195..169881(+) (rocC) [Legionella waltersii strain NCTC13017]
ATGAGAACACAGGAGCTGCATCCCCGCACGGCTGTCATCAATAAAACCCAAAAAAATCAAGCTAAGAGAGCTCGTTCAGA
AGCTTTAACCTGGCTTGCTGCAAAATTTCCTGAGTCTTTTGATAATTCTTTAAGAATTCGGCCTTTAAAAATTGGGATCA
TGAAAGATATTCTAGACTATGCTGATGAAGCAGCGGCGGCTGGAATATCCAAAAGTAAATTGCGTGAGGCTGTAGTTGTT
TTTTCAAGAAGACTAGATTATTTAGCTTGTTTAAAAGCCAAGGAAATGCGGATTAATTTGTTTGGAGATGCTGTTGCTGA
GGTAACCGTTGAAGAAGCGGAACACGCAGCCCTTAAAATTAAGAAACGCATCGAGAAAAGTGTAAAAAATGCTCGTAAAT
CGATGGTAAGCAAATCATCCAGCCAACAGCTGACCAATGATAACTATTATGGAAGTTCAAAAGGGAGTCAACATGAACTC
CAAGACGAATCTTATTCTACCGTTTATCCCTTAAGAAGCTCCGCATACTCACAGCAGTCTTCTCAAACCCCTCCAGTAAA
TAAAGCACCTGCTGTAATCGTAAAACACAAAGCGACCAAACAGTTTGATCCTGATGCTGTAGCGAGGCTAAAAGCAAAAC
TAGGACTGTCCATTAAAGCAAATGAAACAAAGGAAACGGCCGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(25-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W1A6L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

62.771

100

0.636

Multiple sequence alignment