Detailed information NTG1147202

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CKV76_RS09950
• Genome accession: NZ_LT906440
• Coordinates: 1698679..1699539 (+)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain NCTC13798
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1693679..1704539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKV76_RS09935 (SAMEA4076741_01760)	dapD	1694189..1695010 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
CKV76_RS09940 (SAMEA4076741_01761)	pgi	1695220..1696863 (-)	1644	WP_003689806.1	glucose-6-phosphate isomerase	-
CKV76_RS09945 (SAMEA4076741_01762)	pilG	1697373..1698605 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
CKV76_RS09950 (SAMEA4076741_01763)	pilD	1698679..1699539 (+)	861	WP_003689814.1	prepilin peptidase	Machinery gene
CKV76_RS09955 (SAMEA4076741_01764)	coaE	1699536..1700168 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
CKV76_RS09960 (SAMEA4076741_01765)	-	1700161..1700370 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
CKV76_RS09965 (SAMEA4076741_01766)	pilF	1700456..1702132 (-)	1677	WP_003689817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CKV76_RS09980 (SAMEA4076741_01768)	-	1702470..1702916 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
CKV76_RS09985 (SAMEA4076741_01769)	-	1702920..1703894 (-)	975	WP_003689819.1	polyprenyl synthetase family protein	-
CKV76_RS09995 (SAMEA4076741_01770)	rplU	1704118..1704426 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=1147202 CKV76_RS09950 WP_003689814.1 1698679..1699539(+) (pilD) [Neisseria gonorrhoeae strain NCTC13798]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=1147202 CKV76_RS09950 WP_003689814.1 1698679..1699539(+) (pilD) [Neisseria gonorrhoeae strain NCTC13798]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441