Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   CKV76_RS03460 Genome accession   NZ_LT906440
Coordinates   587374..587982 (+) Length   202 a.a.
NCBI ID   WP_047921847.1    Uniprot ID   A0AA44ZGE4
Organism   Neisseria gonorrhoeae strain NCTC13798     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 582374..592982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV76_RS03430 (SAMEA4076741_00590) - 582723..583304 (-) 582 WP_003690895.1 superoxide dismutase -
  CKV76_RS03440 (SAMEA4076741_00591) dnaB 583468..584871 (+) 1404 WP_012503477.1 replicative DNA helicase -
  CKV76_RS15270 - 584865..584977 (-) 113 Protein_583 IS5/IS1182 family transposase -
  CKV76_RS03445 (SAMEA4076741_00592) pilH 585128..585790 (+) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CKV76_RS03450 (SAMEA4076741_00593) pilI 585822..586436 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  CKV76_RS03455 (SAMEA4076741_00594) pilJ 586433..587395 (+) 963 WP_047921846.1 PilW family protein Machinery gene
  CKV76_RS03460 (SAMEA4076741_00595) pilK 587374..587982 (+) 609 WP_047921847.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CKV76_RS03465 (SAMEA4076741_00596) pilL 587984..588457 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  CKV76_RS03470 (SAMEA4076741_00597) - 588527..588835 (-) 309 WP_003706588.1 AzlD family protein -
  CKV76_RS03475 - 588832..589543 (-) 712 Protein_590 AzlC family ABC transporter permease -
  CKV76_RS03480 (SAMEA4076741_00600) dut 589709..590161 (+) 453 WP_003701071.1 dUTP diphosphatase -
  CKV76_RS03485 (SAMEA4076741_00601) dapC 590233..591420 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  CKV76_RS03490 (SAMEA4076741_00602) yaaA 591576..592355 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22039.97 Da        Isoelectric Point: 7.5810

>NTDB_id=1147185 CKV76_RS03460 WP_047921847.1 587374..587982(+) (pilK) [Neisseria gonorrhoeae strain NCTC13798]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEEAFDNIVVKGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1147185 CKV76_RS03460 WP_047921847.1 587374..587982(+) (pilK) [Neisseria gonorrhoeae strain NCTC13798]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGGCTTTTGACAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

92.611

100

0.931

Multiple sequence alignment