Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CKV76_RS02420 Genome accession   NZ_LT906440
Coordinates   417654..418457 (-) Length   267 a.a.
NCBI ID   WP_003687645.1    Uniprot ID   A0AA44ZGK5
Organism   Neisseria gonorrhoeae strain NCTC13798     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 412654..423457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV76_RS13820 - 415058..415333 (-) 276 WP_153707850.1 hypothetical protein -
  CKV76_RS02415 (SAMEA4076741_00411) comA 415365..417584 (+) 2220 WP_020997305.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CKV76_RS02420 (SAMEA4076741_00412) comL 417654..418457 (-) 804 WP_003687645.1 outer membrane protein assembly factor BamD Machinery gene
  CKV76_RS02425 (SAMEA4076741_00413) rluD 418456..419580 (+) 1125 WP_003687642.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CKV76_RS02430 (SAMEA4076741_00414) - 419733..420680 (-) 948 Protein_406 bile acid:sodium symporter family protein -
  CKV76_RS02435 - 420757..420981 (-) 225 WP_225577482.1 hypothetical protein -
  CKV76_RS02440 (SAMEA4076741_00415) pgeF 421134..421913 (+) 780 WP_003690756.1 peptidoglycan editing factor PgeF -
  CKV76_RS02445 (SAMEA4076741_00416) lptE 421965..422444 (+) 480 WP_003690758.1 LPS assembly lipoprotein LptE -
  CKV76_RS02450 (SAMEA4076741_00417) holA 422446..423444 (+) 999 WP_003690761.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30838.90 Da        Isoelectric Point: 9.1654

>NTDB_id=1147178 CKV76_RS02420 WP_003687645.1 417654..418457(-) (comL) [Neisseria gonorrhoeae strain NCTC13798]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1147178 CKV76_RS02420 WP_003687645.1 417654..418457(-) (comL) [Neisseria gonorrhoeae strain NCTC13798]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

100

100

1
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment