Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CKV83_RS09215 Genome accession   NZ_LT906439
Coordinates   1976181..1976945 (+) Length   254 a.a.
NCBI ID   WP_018373567.1    Uniprot ID   -
Organism   Streptococcus merionis strain NCTC13788     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1971181..1981945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS09200 (SAMEA4412692_01835) - 1973576..1974286 (-) 711 WP_018373570.1 YoaK family protein -
  CKV83_RS09205 (SAMEA4412692_01836) rlmH 1974334..1974813 (+) 480 WP_018373569.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CKV83_RS09210 (SAMEA4412692_01837) htrA 1974891..1976105 (+) 1215 WP_018373568.1 S1C family serine protease Regulator
  CKV83_RS09215 (SAMEA4412692_01838) spo0J 1976181..1976945 (+) 765 WP_018373567.1 ParB/RepB/Spo0J family partition protein Regulator
  CKV83_RS09220 (SAMEA4412692_01839) dnaA 1977151..1978530 (+) 1380 WP_018373566.1 chromosomal replication initiator protein DnaA -
  CKV83_RS09225 (SAMEA4412692_01840) dnaN 1978681..1979817 (+) 1137 WP_018373565.1 DNA polymerase III subunit beta -
  CKV83_RS09230 (SAMEA4412692_01841) - 1979895..1980092 (+) 198 WP_018373564.1 DUF951 domain-containing protein -
  CKV83_RS09235 (SAMEA4412692_01842) - 1980224..1980613 (+) 390 WP_018373563.1 helix-turn-helix domain-containing protein -
  CKV83_RS09240 (SAMEA4412692_01844) - 1981215..1981577 (+) 363 WP_018373562.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28939.19 Da        Isoelectric Point: 9.5632

>NTDB_id=1147149 CKV83_RS09215 WP_018373567.1 1976181..1976945(+) (spo0J) [Streptococcus merionis strain NCTC13788]
MNETFAIINIKDIQTNPYQPRQHFEPEKLSELAQSIRENGIIQPLIVRKSAIVGYELMAGERRLRASQLAGLEKVPAIIK
ELSDHDMMTQAIIENLQRHDLNPIEEARAYKRLMDKGNTHEVIAQTVGKSRPYISNSVRLLNLSDTVLDAVEKGQISQAH
ARTLLSLEDSISQEQWLEKIINQNISVRKLEQLLQPPQSKENRKTTDLFSQNAAKKLSQQLGTKVTISEKKGSGSIKIQF
SSLEEFERLMHMFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=1147149 CKV83_RS09215 WP_018373567.1 1976181..1976945(+) (spo0J) [Streptococcus merionis strain NCTC13788]
ATGAATGAAACATTTGCAATCATAAACATTAAAGATATTCAAACCAATCCCTATCAGCCACGTCAGCATTTTGAACCAGA
AAAGTTAAGTGAGCTAGCTCAGTCGATTCGTGAAAATGGGATTATTCAACCCTTAATTGTCCGTAAATCAGCCATTGTTG
GCTATGAACTCATGGCTGGGGAAAGACGTTTACGTGCTAGTCAGTTGGCAGGTTTAGAAAAAGTTCCTGCTATCATCAAG
GAACTGTCAGACCATGACATGATGACTCAGGCTATCATTGAAAATCTGCAGCGTCATGACCTTAACCCTATTGAAGAAGC
GCGTGCTTACAAACGATTGATGGACAAGGGAAATACCCATGAAGTCATCGCTCAAACCGTGGGTAAATCACGTCCTTATA
TCAGTAACAGTGTTAGGCTACTTAACCTTTCTGACACTGTTTTAGATGCTGTTGAAAAGGGGCAAATCTCTCAAGCTCAT
GCTAGAACCTTGCTTTCCTTAGAAGATTCGATCAGTCAAGAGCAGTGGCTGGAAAAAATTATCAACCAAAATATTAGCGT
ACGAAAGCTAGAACAGCTTCTTCAACCTCCCCAATCAAAAGAAAATCGTAAAACCACTGATCTTTTTTCTCAAAATGCAG
CAAAGAAACTCAGCCAACAACTAGGGACAAAAGTGACTATTTCAGAAAAAAAGGGTAGTGGCTCTATTAAAATTCAATTT
TCATCCCTTGAGGAATTCGAACGACTTATGCACATGTTCAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(146-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.336

99.606

0.551

Multiple sequence alignment