Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   CKV83_RS07825 Genome accession   NZ_LT906439
Coordinates   1686822..1687805 (-) Length   327 a.a.
NCBI ID   WP_051071085.1    Uniprot ID   -
Organism   Streptococcus merionis strain NCTC13788     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1681822..1692805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS07815 (SAMEA4412692_01560) - 1682022..1683545 (-) 1524 WP_018373320.1 family 20 glycosylhydrolase -
  CKV83_RS07820 (SAMEA4412692_01561) - 1683768..1686110 (-) 2343 WP_095114570.1 Ig-like domain-containing protein -
  CKV83_RS07825 (SAMEA4412692_01562) sepM 1686822..1687805 (-) 984 WP_051071085.1 SepM family pheromone-processing serine protease Regulator
  CKV83_RS07830 (SAMEA4412692_01563) coaD 1687849..1688352 (-) 504 WP_018373317.1 pantetheine-phosphate adenylyltransferase -
  CKV83_RS11300 - 1688412..1688618 (-) 207 WP_145955198.1 hypothetical protein -
  CKV83_RS07835 (SAMEA4412692_01564) - 1688660..1688953 (-) 294 WP_018373316.1 hypothetical protein -
  CKV83_RS07840 (SAMEA4412692_01565) rsmD 1689093..1689632 (-) 540 WP_018373315.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CKV83_RS07845 (SAMEA4412692_01566) - 1689937..1690983 (-) 1047 WP_083903291.1 MmcQ/YjbR family DNA-binding protein -
  CKV83_RS07850 (SAMEA4412692_01567) - 1691651..1692094 (-) 444 WP_018373313.1 hypothetical protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35271.50 Da        Isoelectric Point: 4.3958

>NTDB_id=1147142 CKV83_RS07825 WP_051071085.1 1686822..1687805(-) (sepM) [Streptococcus merionis strain NCTC13788]
MMAAFIVPLPYYIESPGGAQDVRTVLSVDGKTDSKDGSYNFTYITMTPATFASLVHAWMTPFTDVYSRNEVTGGASTEDF
SRINAFYMETSQNMAEYQALTLAGEDITMDYLGVYVLQIMEDSTFRGILHIADTVTGVNGQRFESSQDLIDYVSKQDLGA
DVEVTFQSNGKTRTEKGQIIKLENGKNGIGIGLTDHTQVASSHDVAFSTAGIGGPSAGLMFTLSIYTQIADPDLRAGRHI
AGSGTIEKDGTVGDIGGIDKKVVSAANSGAEIFFAPDNPVDEKILEVDPKAKNNYQTALEAAKKINTDMVIVPVKTVQDA
IDYLKNH

Nucleotide


Download         Length: 984 bp        

>NTDB_id=1147142 CKV83_RS07825 WP_051071085.1 1686822..1687805(-) (sepM) [Streptococcus merionis strain NCTC13788]
ATGATGGCGGCCTTTATTGTGCCCCTACCCTACTATATTGAATCTCCTGGTGGTGCTCAGGATGTGCGGACGGTGCTTTC
GGTGGACGGTAAGACGGATTCAAAAGATGGCTCCTACAATTTTACCTATATCACCATGACGCCAGCAACTTTTGCGAGTT
TGGTTCATGCCTGGATGACACCTTTTACAGATGTCTATTCTCGGAATGAAGTGACTGGTGGCGCAAGCACCGAAGACTTT
AGTCGTATCAACGCCTTTTACATGGAAACGTCTCAGAATATGGCTGAGTATCAAGCTTTGACGCTTGCGGGAGAGGATAT
TACCATGGATTACTTGGGCGTGTATGTCTTACAAATCATGGAAGATTCAACTTTTCGAGGCATTCTTCACATTGCAGATA
CGGTCACAGGAGTTAACGGTCAACGCTTTGAATCATCTCAAGACTTGATTGATTATGTTTCCAAGCAGGATTTAGGCGCT
GATGTCGAGGTGACTTTCCAGTCTAATGGTAAAACTCGGACTGAAAAAGGCCAGATCATTAAATTAGAAAATGGCAAAAA
TGGGATTGGAATTGGTCTTACAGACCATACTCAGGTAGCCAGTTCGCATGATGTTGCCTTTAGTACAGCAGGGATTGGCG
GGCCATCTGCTGGTCTTATGTTTACCCTTAGTATTTATACTCAGATTGCTGATCCTGACCTTCGCGCAGGGCGTCATATT
GCTGGCTCTGGCACGATTGAAAAAGACGGTACAGTCGGAGACATCGGTGGGATTGATAAGAAAGTTGTTTCGGCGGCAAA
TAGCGGAGCAGAGATCTTTTTTGCACCAGACAATCCTGTTGATGAGAAGATTCTAGAAGTAGATCCCAAAGCCAAGAATA
ACTACCAAACAGCTCTTGAAGCTGCTAAAAAAATTAACACAGATATGGTCATCGTCCCTGTCAAGACAGTCCAAGACGCT
ATTGATTACCTAAAGAATCACTAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(110-174)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(214-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

57.187

100

0.572

Multiple sequence alignment