Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CKV83_RS06855 Genome accession   NZ_LT906439
Coordinates   1483224..1483913 (+) Length   229 a.a.
NCBI ID   WP_018374211.1    Uniprot ID   A0A239SV78
Organism   Streptococcus merionis strain NCTC13788     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1478224..1488913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS06830 (SAMEA4412692_01367) - 1478462..1479073 (-) 612 WP_018374206.1 NADPH-dependent FMN reductase -
  CKV83_RS06835 (SAMEA4412692_01368) - 1479345..1480568 (+) 1224 WP_026217006.1 OFA family MFS transporter -
  CKV83_RS06840 (SAMEA4412692_01369) - 1480685..1481422 (-) 738 WP_026217007.1 ABC transporter permease -
  CKV83_RS06845 (SAMEA4412692_01370) - 1481424..1482176 (-) 753 WP_018374209.1 ABC transporter permease -
  CKV83_RS06850 (SAMEA4412692_01371) - 1482187..1483080 (-) 894 WP_018374210.1 ABC transporter ATP-binding protein -
  CKV83_RS06855 (SAMEA4412692_01372) scnR 1483224..1483913 (+) 690 WP_018374211.1 response regulator transcription factor Regulator
  CKV83_RS06860 (SAMEA4412692_01373) - 1483914..1485227 (+) 1314 WP_018374212.1 sensor histidine kinase KdpD -
  CKV83_RS06865 (SAMEA4412692_01374) - 1485380..1485529 (-) 150 WP_018374213.1 FeoB-associated Cys-rich membrane protein -
  CKV83_RS06870 (SAMEA4412692_01375) feoB 1485539..1487677 (-) 2139 WP_018374214.1 ferrous iron transport protein B -
  CKV83_RS06875 (SAMEA4412692_01376) - 1487763..1488239 (-) 477 WP_018374215.1 ferrous iron transport protein A -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26488.77 Da        Isoelectric Point: 6.1628

>NTDB_id=1147137 CKV83_RS06855 WP_018374211.1 1483224..1483913(+) (scnR) [Streptococcus merionis strain NCTC13788]
MKLTDRKLLILDDNPDILQLVKESLTIAGFTHLTTAHTKKEALDLLRTDQFDLAILDIMLPDGSGFEVLRHIRQHSMMPA
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRSYPPQEELVQLEGCQIDFERAVVLKEEEEISLTAKEF
SLLRVLYNHKNKIVTFDTLLTKVWGEQYEGYENTLMAHIRKIRQKIEINPSKPTHLLTVKGLGYQLRVD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1147137 CKV83_RS06855 WP_018374211.1 1483224..1483913(+) (scnR) [Streptococcus merionis strain NCTC13788]
ATGAAACTGACAGATCGAAAACTACTTATTTTAGATGACAACCCTGATATTTTACAATTGGTCAAAGAGAGTTTAACCAT
CGCCGGCTTTACCCATTTGACAACTGCACATACTAAAAAAGAGGCTCTTGACCTCCTCCGTACAGACCAGTTCGACTTGG
CTATCTTGGACATTATGCTGCCAGACGGTTCTGGCTTTGAAGTTCTGCGCCACATTCGGCAACACTCGATGATGCCTGCC
CTCTTTTTATCAGCTGTTTCTGACATTGAAAAACAGTACCAAGGGTTTGAGTTGGGAGCCGATGATTATATTGTCAAGCC
TTTTCGCCCCAAGGAATTAGAACTGCGCATCTTGTCCATTCTCAAGCGCAGCTATCCCCCGCAAGAGGAACTAGTGCAAC
TAGAAGGCTGTCAAATCGACTTTGAACGCGCAGTTGTTTTAAAAGAGGAAGAAGAAATCTCTCTCACCGCTAAAGAATTT
AGTCTCCTGCGCGTACTCTATAACCACAAGAATAAGATTGTCACCTTTGATACCTTGCTAACAAAGGTCTGGGGCGAGCA
GTACGAAGGATATGAAAATACCCTGATGGCACATATTCGCAAAATACGTCAAAAGATCGAGATCAATCCCTCAAAACCAA
CGCATCTTCTCACCGTCAAGGGATTGGGCTATCAGTTACGGGTGGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239SV78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

71.491

99.563

0.712
  micA Streptococcus pneumoniae Cp1015

38.095

100

0.384

Multiple sequence alignment