Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CKV86_RS00690 Genome accession   NZ_LT906437
Coordinates   106874..107473 (-) Length   199 a.a.
NCBI ID   WP_003700890.1    Uniprot ID   A0AB74ESA6
Organism   Neisseria gonorrhoeae strain NCTC13799     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101874..112473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV86_RS00675 (SAMEA4076765_00092) pilQ 103449..105644 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  CKV86_RS00680 (SAMEA4076765_00093) pilP 105663..106208 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  CKV86_RS00685 (SAMEA4076765_00094) - 106226..106873 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  CKV86_RS00690 (SAMEA4076765_00095) pilN 106874..107473 (-) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  CKV86_RS00695 (SAMEA4076765_00096) pilM 107476..108591 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  CKV86_RS00700 (SAMEA4076765_00097) - 108743..111139 (+) 2397 WP_003687357.1 penicillin-binding protein 1A -
  CKV86_RS00705 (SAMEA4076765_00098) yihA 111260..111889 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22182.59 Da        Isoelectric Point: 10.1157

>NTDB_id=1147010 CKV86_RS00690 WP_003700890.1 106874..107473(-) (pilN) [Neisseria gonorrhoeae strain NCTC13799]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSKIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1147010 CKV86_RS00690 WP_003700890.1 106874..107473(-) (pilN) [Neisseria gonorrhoeae strain NCTC13799]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGAAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

96.985

100

0.97

Multiple sequence alignment