Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   CKV86_RS00680 Genome accession   NZ_LT906437
Coordinates   105663..106208 (-) Length   181 a.a.
NCBI ID   WP_003687351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC13799     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100663..111208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV86_RS00665 (SAMEA4076765_00091) - 101669..102181 (-) 513 WP_003687349.1 shikimate kinase -
  CKV86_RS00675 (SAMEA4076765_00092) pilQ 103449..105644 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  CKV86_RS00680 (SAMEA4076765_00093) pilP 105663..106208 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  CKV86_RS00685 (SAMEA4076765_00094) - 106226..106873 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  CKV86_RS00690 (SAMEA4076765_00095) pilN 106874..107473 (-) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  CKV86_RS00695 (SAMEA4076765_00096) pilM 107476..108591 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  CKV86_RS00700 (SAMEA4076765_00097) - 108743..111139 (+) 2397 WP_003687357.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.60 Da        Isoelectric Point: 4.7529

>NTDB_id=1147009 CKV86_RS00680 WP_003687351.1 105663..106208(-) (pilP) [Neisseria gonorrhoeae strain NCTC13799]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1147009 CKV86_RS00680 WP_003687351.1 105663..106208(-) (pilP) [Neisseria gonorrhoeae strain NCTC13799]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983

Multiple sequence alignment