Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   CKV66_RS10095 Genome accession   NZ_LT906434
Coordinates   2144449..2148072 (+) Length   1207 a.a.
NCBI ID   WP_085362843.1    Uniprot ID   A0AB38DU38
Organism   Neisseria zoodegmatis strain NCTC12230     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2139449..2153072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV66_RS10080 (SAMEA4504057_01975) - 2140489..2141388 (-) 900 WP_085362846.1 Dyp-type peroxidase -
  CKV66_RS10085 (SAMEA4504057_01976) - 2141599..2142702 (+) 1104 WP_085362845.1 metallophosphoesterase -
  CKV66_RS10090 (SAMEA4504057_01977) - 2142789..2144108 (-) 1320 WP_085362844.1 MFS transporter -
  CKV66_RS10095 (SAMEA4504057_01978) recB 2144449..2148072 (+) 3624 WP_085362843.1 exodeoxyribonuclease V subunit beta Machinery gene
  CKV66_RS10100 (SAMEA4504057_01979) rpsU 2148415..2148627 (+) 213 WP_054600191.1 30S ribosomal protein S21 -
  CKV66_RS10105 (SAMEA4504057_01980) - 2148927..2149373 (+) 447 WP_085362915.1 GatB/YqeY domain-containing protein -
  CKV66_RS10110 (SAMEA4504057_01981) dnaG 2149442..2151217 (+) 1776 WP_085362842.1 DNA primase -

Sequence

Protein


Download         Length: 1207 a.a.        Molecular weight: 134982.12 Da        Isoelectric Point: 5.8140

>NTDB_id=1146949 CKV66_RS10095 WP_085362843.1 2144449..2148072(+) (recB) [Neisseria zoodegmatis strain NCTC12230]
MPAQPFNPLTIPISGTSLIEASAGTGKTYGIAALFTRLIVLEKMPVESVLVVTFTKAATAELKTRLRARLDDVLSVLENV
PDAAHHSDGLAAYCAQHHEGDVFLPNLLEAALQQESQERLTVRLKAAISRFDNAAIYTIHGFCQRLLRDYAFFCQAPFDV
ELTEDTRERLLVPAQDFWRENVSHNPLLAKLVFEHRHTPETMLSEIKSFIGRPYLAFRRPESNIETAQKTLAECWENIRA
QLPELAQTFWTIHPVLNGNKYRKNTFQSVFALLEAAAESNTLPSNHDKLPLFAADALEAATKKTAAPDTAAFARLNILAR
LGECFNGLAEAEQNTLIQLQLDMLQYIGNALEAEKKSRRERSFDDLLLDVYHALIRSPHREQLAQTVAAVWKAALIDEFQ
DTDPLQYEIFKQLFIRQGNPLFLVGDPKQAIYSFRGADIYAYMQAAEDADARYTLTTNFRSHAKLINGIGALFKQKHRPF
VLDSIDYADVNAARSESRLNPPKTAVSIRWLNHETDGGGNKDALRSRAADNCADEIAAVLNDAAAGRLNYQKNTAGPAVP
LQSGQIAVLVRTHNEGQMIAKALKQRNIQSVLLQRESVFASEEAEAVDALIGFWLQPQRTETLRFVLGGILFRYTAAMLH
ELNRNETALLSWINSAQTAAEVWQQHGIYAAMQHFAAEHGIEARLLSRGSTRSLTNYHQLIERLAEEDEQSRSPAALREW
LKNQIQTAQNAEHPKGENNLLRLESDENLVKIVTMHAAKGLQYPLVYCPFVWDAKENNLKGWQILHRSHQTTELLHEKQL
DDADRNQLADENLSENLRLLYVALTRAEEHLVIYAAYCSNTPDNTFAYLLEGTADSRRADIAAAYTAAKKEAATMLKNNW
QRFIGNAPADTDFSFTDTPPEQAVYRLPPVSDGLYQAAGVSARPFEFIRHTSFTGLSRHTRNTDEHTREELQPAIDTAET
ATDAPLSAMPSEHTDTRSIHTFPRGASAGVCLHEILETFDFGSPAAAQSETVAATLEHYGFDAGWLPAVTAMLDHTRLSP
LDGQTALADIPATQRLAEMGFTLFMHDFTLNRLQQWFAETEHGLPAECATAAKLLDFNDVNGFLNGFIDMVCRDSDGLVT
VIDYKSNHLGYTAEDYTQAAMNEAVAHHHYYLQALIYAIATARHFASRQQPLHTVAVRYLFLRGLDGSGNNGIWSWNIDT
ALLREWL

Nucleotide


Download         Length: 3624 bp        

>NTDB_id=1146949 CKV66_RS10095 WP_085362843.1 2144449..2148072(+) (recB) [Neisseria zoodegmatis strain NCTC12230]
ATGCCAGCACAACCGTTTAACCCGCTCACCATTCCCATTTCGGGCACGTCCCTTATCGAAGCCTCTGCCGGCACAGGCAA
AACCTACGGCATTGCCGCTTTGTTTACCCGTTTGATCGTGCTGGAAAAAATGCCCGTAGAAAGCGTGTTGGTCGTTACCT
TTACCAAAGCCGCTACCGCCGAACTGAAAACCCGCCTGCGGGCGCGGTTGGACGATGTGTTATCGGTATTGGAAAACGTG
CCGGATGCCGCACACCATTCAGACGGCCTCGCCGCGTATTGCGCGCAACACCACGAAGGCGACGTATTTTTACCCAACCT
GCTCGAAGCCGCCTTGCAGCAAGAAAGCCAAGAGCGCCTTACCGTTCGCCTGAAGGCAGCCATCAGCCGCTTCGACAATG
CCGCCATTTATACCATTCACGGCTTCTGCCAACGCCTGCTGCGCGATTATGCCTTTTTCTGCCAAGCCCCTTTCGACGTA
GAACTAACCGAAGACACGCGCGAACGCCTGCTGGTGCCCGCCCAAGACTTCTGGCGCGAAAACGTGTCGCACAATCCGCT
ATTGGCCAAACTCGTGTTCGAGCACCGCCACACGCCCGAAACCATGCTTTCCGAAATCAAAAGCTTTATCGGCCGCCCCT
ATCTGGCTTTCAGACGGCCTGAAAGCAATATCGAAACCGCACAAAAGACATTGGCGGAATGCTGGGAAAATATCCGCGCC
CAACTGCCCGAATTGGCGCAAACCTTTTGGACAATCCACCCCGTTTTAAACGGCAACAAATACCGCAAAAACACCTTCCA
AAGCGTTTTTGCCTTACTGGAAGCCGCAGCAGAAAGCAACACCCTGCCTTCCAACCACGACAAACTCCCCCTTTTTGCCG
CCGACGCTCTTGAAGCCGCCACCAAAAAAACCGCCGCGCCCGACACCGCCGCCTTTGCCCGCTTAAACATACTCGCACGG
CTGGGCGAATGCTTCAACGGTTTGGCCGAAGCCGAACAAAACACCCTGATACAGCTGCAACTCGACATGCTGCAATACAT
CGGCAATGCGTTGGAGGCCGAAAAAAAATCCCGCCGCGAACGCAGTTTCGACGACCTGCTGCTCGATGTTTACCATGCCC
TTATCCGCAGCCCGCACCGCGAACAATTGGCACAAACCGTTGCAGCCGTTTGGAAAGCCGCCCTGATCGACGAATTTCAA
GACACCGACCCCCTGCAATACGAAATATTCAAACAACTGTTTATCCGTCAGGGCAACCCGCTGTTTTTGGTCGGCGATCC
CAAACAGGCGATTTACAGCTTTCGCGGAGCCGACATCTACGCCTACATGCAGGCCGCCGAAGATGCCGACGCCCGCTACA
CCCTGACCACCAACTTCCGCAGCCACGCCAAACTGATCAACGGCATCGGCGCCTTGTTCAAACAGAAACACCGCCCCTTC
GTGCTCGACAGCATCGACTATGCCGATGTAAACGCCGCCCGCAGCGAAAGCCGTCTGAATCCGCCCAAAACCGCCGTTTC
CATACGCTGGCTCAACCACGAAACCGACGGCGGCGGCAACAAAGATGCCCTGCGCAGCCGTGCGGCGGATAACTGTGCCG
ACGAAATAGCCGCCGTTCTCAACGATGCCGCGGCAGGCCGTCTGAATTATCAGAAAAACACCGCCGGCCCCGCCGTGCCG
CTGCAATCGGGGCAGATTGCCGTACTCGTGCGCACCCACAACGAAGGGCAGATGATTGCCAAAGCCCTGAAACAACGCAA
CATCCAAAGCGTGCTGCTGCAACGCGAATCGGTGTTTGCCTCAGAAGAAGCCGAGGCCGTTGACGCTCTGATCGGCTTCT
GGCTGCAACCACAACGCACCGAAACATTGCGCTTCGTGCTCGGCGGCATATTGTTCCGCTACACCGCCGCCATGCTCCAC
GAACTCAACCGCAACGAAACCGCACTGCTCTCGTGGATCAACTCCGCCCAAACCGCCGCCGAAGTATGGCAGCAACACGG
CATCTACGCCGCCATGCAGCACTTTGCCGCCGAACACGGCATCGAAGCCCGCCTGCTCTCGCGCGGCAGCACCCGCAGTC
TCACCAACTACCATCAACTGATCGAACGCTTGGCCGAAGAAGACGAACAAAGCCGCTCCCCCGCCGCACTCCGGGAATGG
CTCAAAAACCAGATTCAGACGGCCCAAAACGCCGAACATCCCAAAGGCGAAAACAATCTGCTGCGGCTCGAAAGCGACGA
AAACCTCGTCAAAATCGTGACCATGCACGCCGCCAAAGGCTTGCAGTACCCGCTCGTATATTGCCCGTTTGTGTGGGATG
CCAAAGAAAACAACCTCAAAGGCTGGCAGATTCTGCACCGTTCCCACCAAACCACCGAACTGCTGCACGAAAAACAGCTC
GACGACGCCGACCGCAACCAGCTCGCCGACGAAAACCTGAGCGAAAACCTGCGCCTGCTGTATGTTGCCCTCACCCGCGC
CGAAGAGCATTTAGTTATCTATGCCGCCTATTGCAGCAACACGCCCGACAACACCTTCGCCTATCTGCTCGAAGGCACCG
CCGACAGCCGCCGCGCCGACATCGCCGCCGCTTATACCGCCGCAAAAAAAGAAGCCGCCACCATGCTGAAAAACAACTGG
CAGCGGTTCATCGGCAATGCCCCTGCGGATACCGACTTCAGCTTTACCGACACCCCGCCCGAACAGGCGGTTTACCGATT
GCCGCCCGTTTCAGACGGCCTCTACCAAGCAGCCGGCGTTTCTGCACGCCCGTTCGAGTTCATACGCCATACCAGCTTTA
CCGGCTTGAGCCGCCACACCCGCAACACCGACGAACATACCCGCGAAGAACTGCAACCGGCCATCGACACAGCGGAAACC
GCAACCGACGCACCTTTATCCGCCATGCCGTCTGAACACACCGATACCCGCAGCATCCACACCTTCCCGCGCGGCGCAAG
CGCAGGCGTGTGCCTGCACGAAATACTCGAAACCTTCGATTTCGGCTCTCCCGCCGCCGCACAAAGCGAAACCGTTGCCG
CCACGCTGGAACACTACGGTTTCGATGCCGGCTGGCTGCCCGCCGTTACCGCCATGCTCGACCACACCCGCCTCTCCCCA
CTCGACGGCCAAACCGCGCTGGCCGACATTCCCGCCACACAACGCCTTGCCGAAATGGGCTTTACCCTGTTTATGCACGA
CTTCACACTCAACCGTTTGCAGCAATGGTTCGCCGAAACAGAACACGGGCTGCCCGCCGAATGCGCCACCGCCGCCAAAC
TGCTCGACTTCAACGACGTTAACGGTTTTTTAAACGGCTTCATCGATATGGTCTGCCGCGATTCAGACGGCCTCGTTACC
GTAATCGACTATAAATCCAACCATTTAGGCTACACCGCAGAAGATTACACCCAAGCAGCCATGAACGAAGCCGTCGCCCA
CCACCACTATTACCTGCAAGCCCTGATTTACGCCATTGCCACCGCCCGTCACTTCGCCTCACGCCAGCAGCCCCTGCACA
CCGTTGCTGTGCGCTATCTCTTTCTGCGCGGCTTAGACGGCAGCGGCAACAACGGCATCTGGTCGTGGAACATCGACACC
GCCTTATTGCGGGAATGGCTGTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1069-1183)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(8-449)

UvrD-like helicase C-terminal domain (UvrD_C)

(453-834)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

59.095

100

0.595

Multiple sequence alignment