Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   CKV66_RS08895 Genome accession   NZ_LT906434
Coordinates   1884428..1886164 (-) Length   578 a.a.
NCBI ID   WP_085363075.1    Uniprot ID   -
Organism   Neisseria zoodegmatis strain NCTC12230     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1879428..1891164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV66_RS08875 (SAMEA4504057_01739) - 1880079..1881446 (-) 1368 WP_085363071.1 cytochrome ubiquinol oxidase subunit I -
  CKV66_RS08880 (SAMEA4504057_01740) - 1881955..1882260 (-) 306 WP_085363072.1 hypothetical protein -
  CKV66_RS08885 (SAMEA4504057_01741) - 1882466..1882699 (-) 234 WP_085363073.1 hypothetical protein -
  CKV66_RS08890 (SAMEA4504057_01742) - 1883166..1884350 (-) 1185 WP_085363074.1 acetylornithine/succinyldiaminopimelate transaminase -
  CKV66_RS08895 (SAMEA4504057_01743) recD 1884428..1886164 (-) 1737 WP_085363075.1 exodeoxyribonuclease V subunit alpha Machinery gene
  CKV66_RS08900 (SAMEA4504057_01744) tpx 1886313..1886807 (-) 495 WP_085363076.1 thiol peroxidase -
  CKV66_RS08905 (SAMEA4504057_01745) - 1886841..1887446 (-) 606 WP_085363077.1 DUF4230 domain-containing protein -
  CKV66_RS08910 (SAMEA4504057_01746) - 1887732..1888991 (-) 1260 WP_085363078.1 DUF2254 domain-containing protein -
  CKV66_RS08915 (SAMEA4504057_01747) tmk 1889124..1889750 (-) 627 WP_085363079.1 dTMP kinase -
  CKV66_RS08920 (SAMEA4504057_01748) mltG 1889921..1890916 (-) 996 WP_085363080.1 endolytic transglycosylase MltG -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 63123.08 Da        Isoelectric Point: 6.3269

>NTDB_id=1146946 CKV66_RS08895 WP_085363075.1 1884428..1886164(-) (recD) [Neisseria zoodegmatis strain NCTC12230]
MSYDDLNQAAADAAVAMLRRHAPEEAEVVEPYVFKLFAALQEGHAYIWLEEHEARSLQRAQSVAGNSGDTPLILAGRKLF
LGRIWQLERDLAAEIVRLAGAAVPPVDWLQAGRNLEAWFGLEGSNGQRDAAALALLKPFMLISGGPGTGKTTTVAKLLGL
LCGHAGKLPRIALAAPTGKAAAHMARALHKALATFDLPDAVRNHLLQLEGQTVHRLLKLRPPQMLPLFDRDQPLPLDILI
IDEASMLDIALLLQLLQAVPSGCRVVLLGDENQLPSVGAGAVLSELAQKTVLTAEAAQELEAMLPQHGFTVAEHAPLLAE
NVARLQVSHRFGDDSGIGCLARAVAAENADEAWAQFARFPDVLEVRAGSGKQQAEELYRCQQRYWQAVDAGDVAAAFQHQ
GDAVVLAARRDDAQAFNEEYRRCLQRHRRSHADAPWFAGQVVMVSRNDYALDVFNGDIGLILPDDEQPDVLAAYFPVAGS
YRKIALSRLPVHETAFAMTVHKSQGSEYHEVWLLPPRQAEAGNAHGLNKALLYTAITRARERFVFWGGKEVFQTACTLNE
RRRSALREMIQSNGLLAG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1146946 CKV66_RS08895 WP_085363075.1 1884428..1886164(-) (recD) [Neisseria zoodegmatis strain NCTC12230]
ATGTCTTACGATGATTTGAACCAAGCGGCTGCCGATGCGGCGGTGGCCATGCTCCGACGTCATGCGCCCGAAGAGGCGGA
GGTGGTGGAGCCTTATGTATTCAAGCTGTTTGCCGCTTTACAGGAAGGGCATGCGTATATTTGGCTGGAAGAACACGAAG
CGCGCTCTTTGCAGCGGGCGCAGTCGGTAGCGGGCAACAGCGGTGATACGCCGTTGATTTTAGCGGGCAGAAAGCTTTTT
CTGGGGCGGATATGGCAGCTTGAACGCGATTTGGCCGCAGAGATTGTGCGTTTGGCCGGTGCTGCCGTGCCGCCGGTGGA
CTGGTTGCAGGCAGGGCGGAATTTGGAGGCTTGGTTCGGTTTGGAAGGCAGCAACGGCCAGCGTGATGCGGCGGCATTGG
CTTTGTTGAAACCTTTTATGCTGATCAGCGGCGGGCCGGGCACGGGCAAAACCACGACGGTGGCGAAACTGCTCGGTTTG
TTGTGCGGCCATGCGGGCAAGCTGCCGCGCATTGCGTTGGCCGCGCCTACGGGCAAAGCGGCGGCACACATGGCGCGGGC
TTTGCATAAGGCGTTGGCTACATTCGATTTGCCCGACGCGGTGCGCAACCATCTGCTGCAACTCGAAGGGCAGACCGTGC
ACCGTTTGCTGAAACTGCGTCCGCCGCAGATGTTGCCGCTGTTTGATCGCGATCAGCCGTTGCCGCTGGATATTTTGATT
ATCGACGAAGCGTCTATGCTCGATATCGCTTTGCTGTTGCAGCTTTTGCAGGCGGTGCCGTCGGGCTGCCGTGTGGTGCT
GCTGGGCGATGAAAACCAGCTGCCCTCGGTGGGCGCCGGTGCGGTTTTGTCGGAGCTGGCTCAAAAAACGGTGCTGACTG
CCGAAGCGGCGCAAGAATTGGAAGCAATGTTGCCGCAGCATGGTTTTACGGTGGCGGAACACGCGCCGCTGTTGGCCGAA
AACGTGGCGCGTTTGCAGGTGAGCCACCGCTTTGGCGACGACAGCGGCATCGGCTGTTTGGCGCGGGCGGTGGCGGCGGA
AAATGCTGACGAAGCGTGGGCGCAGTTTGCCCGTTTCCCCGACGTGCTCGAAGTGAGGGCGGGCAGCGGCAAGCAGCAGG
CGGAAGAGCTTTACCGTTGCCAGCAGCGTTATTGGCAGGCGGTGGACGCGGGCGATGTGGCGGCGGCATTTCAGCATCAG
GGTGATGCGGTGGTGTTGGCGGCGAGGCGCGACGATGCGCAGGCGTTTAACGAAGAATACCGCCGCTGCCTGCAACGCCA
TAGGCGCTCCCATGCAGATGCGCCGTGGTTTGCGGGGCAGGTGGTGATGGTGTCGCGCAACGATTATGCGTTGGACGTGT
TTAACGGCGACATCGGCCTGATTTTGCCCGACGACGAACAGCCAGATGTGCTGGCAGCTTATTTTCCCGTGGCGGGCAGT
TACCGCAAAATCGCCCTCAGCCGCCTGCCCGTGCATGAAACTGCTTTTGCCATGACCGTGCATAAAAGCCAAGGTTCGGA
GTATCACGAAGTATGGCTGTTGCCGCCGCGGCAGGCAGAAGCGGGCAATGCTCACGGTTTGAACAAAGCTTTGCTGTACA
CCGCCATTACCCGCGCCCGCGAGCGGTTTGTGTTTTGGGGCGGCAAAGAGGTTTTTCAGACGGCCTGTACGCTCAACGAA
CGGCGCCGCAGCGCTTTACGCGAAATGATACAGAGCAACGGCTTACTCGCAGGCTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-542)

AAA domain (AAA_30)

(124-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

57.986

99.654

0.578

Multiple sequence alignment