Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   CKV66_RS03070 Genome accession   NZ_LT906434
Coordinates   663445..665484 (-) Length   679 a.a.
NCBI ID   WP_085363351.1    Uniprot ID   A0AB38DQ53
Organism   Neisseria zoodegmatis strain NCTC12230     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 658445..670484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV66_RS03045 (SAMEA4504057_00600) lptB 658506..659237 (+) 732 WP_054600555.1 LPS export ABC transporter ATP-binding protein -
  CKV66_RS03050 (SAMEA4504057_00601) rpoN 659559..660911 (+) 1353 WP_085363348.1 RNA polymerase factor sigma-54 -
  CKV66_RS03055 (SAMEA4504057_00602) hpf 661074..661394 (+) 321 WP_085363349.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CKV66_RS03060 (SAMEA4504057_00603) - 661683..662216 (-) 534 WP_085363350.1 alpha/beta hydrolase -
  CKV66_RS12470 (SAMEA4504057_00604) - 662260..663330 (-) 1071 WP_231990512.1 hypothetical protein -
  CKV66_RS03070 (SAMEA4504057_00605) recG 663445..665484 (-) 2040 WP_085363351.1 ATP-dependent DNA helicase RecG Machinery gene
  CKV66_RS03075 (SAMEA4504057_00606) - 665780..666670 (-) 891 WP_231990513.1 DMT family transporter -
  CKV66_RS03080 (SAMEA4504057_00607) - 666946..667608 (+) 663 WP_085363352.1 helix-turn-helix transcriptional regulator -
  CKV66_RS03085 (SAMEA4504057_00608) speA 667828..669735 (+) 1908 WP_085363353.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75485.17 Da        Isoelectric Point: 7.4239

>NTDB_id=1146930 CKV66_RS03070 WP_085363351.1 663445..665484(-) (recG) [Neisseria zoodegmatis strain NCTC12230]
MTPEHQKLLKITDTAAKKLEKLNLHTPWDVALHLPLRYEDETHIMPIKDAPIGVPCQVEGIVTLQEVQFKPRKQLVVQIQ
DDSGSVLFLRFIHFYPSHQKQMAQGKRIRAVGEIKHGFYGDEMIHPKIRDADNSSLAESLTPVYPTVNGLNQPTLRRIVQ
TALEALPLHDTLHDELLGRLKLPHLAESLRLLHAPPPDYSIRQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRISGQAS
PLHGTGEWSGKLLNALPFSLTQAQQRVLAEIRADMQQTHPMHRLLQGDVGSGKTIVAALAALTAVEAGSQVAVMAPTEIL
AEQHYLKFKQWFEPLGLSVAWLSGSQRKKAKEQNKAALSNGLAPIAVGTHALFQEDVQFHNLGLVIVDEQHRFGVAQRLA
LKNKGQDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPNRTPIQTRLVNSLRRPEVEGFVLNTCRKGRQVYWVCPLIE
ESETLQLQTATETQAALQTALPELSIGLVHGRMKAAEKAQVMAEFAAGRLNVLVATTVIEVGVDVPNASLMVIEHAERMG
LAQLHQLRGRVGRGAAASTCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEKAREIAPQLIEENPDIVEAHLNRWLASREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=1146930 CKV66_RS03070 WP_085363351.1 663445..665484(-) (recG) [Neisseria zoodegmatis strain NCTC12230]
ATGACACCCGAACACCAAAAGCTGCTCAAAATCACCGATACCGCCGCCAAAAAGCTCGAAAAGCTCAACCTGCACACCCC
GTGGGACGTTGCCCTGCACCTACCGCTGCGCTACGAAGACGAAACCCACATCATGCCGATTAAAGACGCACCCATCGGCG
TGCCGTGCCAAGTCGAAGGCATCGTAACCCTGCAAGAAGTGCAGTTCAAACCGCGCAAGCAGCTTGTCGTGCAGATTCAA
GACGACTCCGGCAGCGTGCTGTTTCTGCGCTTCATCCACTTCTACCCCAGCCATCAAAAACAAATGGCGCAAGGCAAACG
CATCCGCGCCGTGGGCGAAATCAAACACGGTTTTTATGGCGACGAAATGATCCACCCCAAAATCCGCGATGCCGACAACA
GCAGCCTTGCCGAAAGCCTTACCCCCGTTTACCCCACCGTAAACGGCCTCAACCAGCCCACCTTACGCCGCATCGTTCAG
ACGGCCTTAGAAGCCCTGCCCCTGCACGACACCCTGCACGACGAACTCTTAGGCCGTCTGAAACTGCCGCACTTGGCCGA
AAGCCTGCGCCTTTTGCACGCCCCGCCGCCCGATTACAGCATCCGCCAACTTTCAGACGGCACCCTCCCCGCATGGCAGC
GGCTCAAATTCGACGAACTGCTCGCCCAACAGCTCTCCATGCGGCTCGCCCGGCAAAAACGCATCAGCGGGCAGGCTTCC
CCCCTGCACGGCACCGGCGAATGGTCGGGCAAACTGCTCAACGCCCTGCCCTTTTCCCTCACCCAAGCCCAACAGCGCGT
GCTGGCCGAAATCCGTGCCGACATGCAGCAAACCCACCCCATGCACCGCCTGCTGCAAGGCGACGTAGGCAGCGGCAAAA
CCATCGTTGCCGCCCTGGCCGCCCTCACCGCCGTCGAAGCCGGCAGCCAAGTTGCCGTGATGGCACCCACCGAAATCCTC
GCAGAACAGCACTACCTCAAATTCAAACAATGGTTCGAGCCGCTCGGCCTCAGCGTTGCATGGCTTTCCGGCAGCCAGCG
CAAAAAAGCCAAAGAACAAAACAAAGCCGCCCTTTCAAACGGCCTCGCCCCCATCGCCGTCGGCACCCACGCCCTCTTTC
AAGAAGACGTACAGTTCCACAACCTCGGCCTCGTCATCGTCGACGAACAGCACCGCTTCGGCGTCGCCCAACGCCTCGCC
CTCAAAAACAAAGGGCAAGACGTACACCAGCTCATGATGTCCGCCACCCCCATCCCCCGCACGCTGGCCATGAGCTTTTT
CGCCGACCTCGACGTTTCCGTGATCGACGAACTGCCGCCCAACCGCACCCCCATCCAAACCCGCCTCGTCAACAGCCTGC
GCCGCCCCGAAGTCGAAGGCTTCGTACTCAACACCTGCCGCAAAGGGCGGCAGGTTTACTGGGTCTGCCCCCTCATCGAA
GAAAGCGAAACCCTGCAACTGCAAACCGCCACCGAAACCCAAGCCGCCCTTCAAACGGCCCTACCCGAACTCAGCATCGG
CCTCGTCCACGGCCGCATGAAAGCCGCCGAAAAAGCCCAAGTGATGGCCGAATTTGCCGCAGGCCGTCTGAACGTACTCG
TTGCCACCACCGTTATCGAAGTCGGCGTAGACGTACCCAACGCCAGCCTCATGGTTATCGAACACGCCGAACGCATGGGC
TTGGCGCAACTGCACCAACTGCGCGGACGCGTAGGCCGCGGCGCCGCCGCCAGCACCTGCGTCTTACTCTTCGCCGAACC
CCTGAGCGAGCTGGCCAAAGCCCGCCTCAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTCGGCGCACGCCAAAGCGGCGTACCCATGCTCCGCTTTGCCAACCTCGAAGAAGAC
CTGCACCTCCTAGAAAAAGCCCGCGAAATCGCCCCCCAACTGATCGAAGAGAACCCCGACATCGTCGAAGCCCACCTCAA
CCGCTGGCTGGCGAGCAGGGAGGGTTATTTGGGGGTTTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

DEAD/DEAH box helicase (DEAD)

(263-418)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

RecG wedge domain (RecG_wedge)

(12-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

82.769

100

0.828

Multiple sequence alignment