Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   CKV66_RS03005 Genome accession   NZ_LT906434
Coordinates   647650..650880 (-) Length   1076 a.a.
NCBI ID   WP_085363341.1    Uniprot ID   A0AB38DNV8
Organism   Neisseria zoodegmatis strain NCTC12230     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 642650..655880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV66_RS02985 (SAMEA4504057_00588) - 642806..644026 (-) 1221 WP_085363337.1 YihY family inner membrane protein -
  CKV66_RS02990 (SAMEA4504057_00589) wrbA 644074..644682 (+) 609 WP_085363338.1 NAD(P)H:quinone oxidoreductase -
  CKV66_RS02995 (SAMEA4504057_00590) nfsA 644837..645568 (+) 732 WP_085363339.1 oxygen-insensitive NADPH nitroreductase -
  CKV66_RS03000 (SAMEA4504057_00591) - 645783..647192 (-) 1410 WP_085363340.1 DEAD/DEAH box helicase -
  CKV66_RS03005 (SAMEA4504057_00592) recC 647650..650880 (-) 3231 WP_085363341.1 exodeoxyribonuclease V subunit gamma Machinery gene
  CKV66_RS03010 (SAMEA4504057_00593) ppk2 651037..651978 (-) 942 WP_085363342.1 polyphosphate kinase 2 -
  CKV66_RS03015 (SAMEA4504057_00594) - 652185..653981 (+) 1797 WP_085363438.1 bifunctional chorismate-binding protein/class IV aminotransferase -
  CKV66_RS03020 (SAMEA4504057_00595) tal 654457..655512 (-) 1056 WP_085363343.1 transaldolase -

Sequence

Protein


Download         Length: 1076 a.a.        Molecular weight: 121814.49 Da        Isoelectric Point: 5.6633

>NTDB_id=1146929 CKV66_RS03005 WP_085363341.1 647650..650880(-) (recC) [Neisseria zoodegmatis strain NCTC12230]
MLYLYQSNRLEDLAALFTRVHSLQPPENPFEAEEIVVQSQGMRRYLNTYLARETGIAANLNFSLPAGLAWQLMRRFIPGI
PALSPFAPEVMRWRLLGLFQSQDFQTASEYLPAREALQSYLDSGNTAAYQLAGQLADIFDQYLVYRPQWIDAWQQGKSMG
LGSDENWQAVLWRFLDDGSQHTPHRVGLWRQLLDSLDPQHLPRRYCVFGIATMAPMYLQLLQALAEHCDVHIFALNPSSG
YWGNVIEAAQILQQEDDADLSLSGHPLLASLGKQGRDFFDALTDIPKHEISVFDEEPFQTAPPTLLQRLQYDIQTLSMPS
ENPNGLPQPDLSDGSIQAVSAHSPLRELHILKDKLLQVLDQHPDWQPHDIAVLTPDIEPYSPFIEAVFGQQQAGSRALPY
SVSDVKISRRQPLFQALAQALELLESRFEVNLLLPLLENDLVLQRFELTRDDLPLLHDTIAALNVHWGTDEHMRGGTNNL
FTWQQGLERLALGWMLPESRHPLWQRISAWHANPNHTAVLSRFSALIRTLTATARLWRQPASVPEWTERIRNLTAALTAT
DTDGQYAWQQLTQALARWQEEAELAGFSGTLPRQTVIRHIGRFLDSESQAGFLRGGITFCSMVPMRSLPFKMICLLGLND
GDFPRNTKAAAFDLIARHPQKGDRARRDDDRYLFLEAVMSARDILYLSYIGRDIRNDQPLAPSALLGELIDTLAAMTGRS
AQELHTHWVKQHPLQPFSHRYFTPESAGSDGLTSTRRDYAEALNRPPEPEAPFFTEPLDDTAAADNTVAHHSFIRFWKNP
VRTWLQHTLHWQKPYRDAAWEAAEPFEPQQSARITAEYTAARRHNEDFGRLESRLQAESLLPAGELGALWQNRFQTAAKS
LDHTLVTSPKLPPAPYTLAVGAHTLEGSLNHLYRHGQIYFPGQAFKAPEQLAVLLEHLIFCAVRPSETGQYQTHILLPEQ
PQTLAEIPQQEAVEALQNWLEYYQIGQTRPLPFFPRVNYKAAQEWNKSNDQSKALNEAYKLYHGGTHSAGQKSYPEVALV
FGGNEEDPTASTLFWNITADLLAPLIRLTTPPADND

Nucleotide


Download         Length: 3231 bp        

>NTDB_id=1146929 CKV66_RS03005 WP_085363341.1 647650..650880(-) (recC) [Neisseria zoodegmatis strain NCTC12230]
ATGCTTTATCTTTACCAGTCCAACCGCCTCGAAGACTTAGCCGCCCTCTTTACCCGCGTGCACAGCCTGCAACCGCCCGA
AAACCCTTTCGAGGCGGAGGAAATCGTGGTGCAGAGCCAAGGGATGCGGCGTTATCTCAACACCTATCTGGCGCGTGAAA
CCGGTATTGCGGCCAACCTCAATTTCAGCCTGCCCGCCGGCTTGGCGTGGCAGCTGATGCGGCGGTTTATTCCCGGCATT
CCCGCGCTTAGCCCGTTTGCCCCCGAAGTGATGCGCTGGCGGCTGCTCGGCCTGTTTCAAAGCCAAGATTTTCAGACGGC
CTCCGAATACCTGCCCGCACGCGAAGCCCTGCAAAGCTATCTCGACAGCGGCAACACCGCCGCCTACCAGCTGGCCGGAC
AACTCGCCGACATTTTCGACCAATACCTCGTGTACCGCCCGCAATGGATAGACGCTTGGCAGCAAGGCAAAAGCATGGGC
TTGGGCAGCGACGAAAACTGGCAGGCCGTTTTGTGGCGTTTTCTCGACGACGGCTCGCAGCACACGCCCCACCGCGTCGG
CTTGTGGCGGCAGCTGCTCGATTCGCTCGACCCGCAGCACCTGCCCCGCCGCTACTGTGTTTTCGGCATCGCCACCATGG
CACCGATGTATCTGCAACTGTTGCAGGCGCTGGCCGAACATTGCGACGTGCACATTTTCGCGCTCAACCCCAGCAGCGGC
TATTGGGGCAACGTAATTGAAGCGGCGCAAATCCTCCAACAGGAAGACGATGCCGATTTAAGCCTTTCCGGCCACCCGCT
GCTCGCTTCGCTGGGCAAACAGGGGCGCGACTTTTTCGACGCGCTCACCGACATACCCAAACACGAAATTTCCGTATTCG
ACGAAGAACCTTTTCAGACGGCCCCGCCCACACTGCTTCAGCGTTTGCAATACGACATCCAAACCCTGTCGATGCCGTCT
GAAAACCCAAACGGCCTGCCCCAACCGGACTTAAGCGACGGCTCGATACAGGCCGTATCCGCGCACAGCCCCCTGCGCGA
ACTGCACATTCTCAAAGACAAACTGCTGCAAGTGCTCGATCAGCATCCCGATTGGCAGCCGCACGACATCGCCGTACTCA
CGCCCGATATCGAACCCTACAGCCCCTTTATCGAAGCCGTGTTCGGGCAACAGCAGGCAGGCAGCCGCGCCCTGCCCTAT
TCGGTATCCGACGTTAAAATCAGCCGCCGCCAACCCCTGTTTCAAGCACTCGCCCAAGCCCTGGAGCTGCTCGAAAGCCG
TTTTGAAGTCAACCTGCTGCTGCCGCTGCTCGAAAACGACCTTGTGCTGCAACGCTTCGAGCTGACCCGCGACGACCTGC
CGCTGCTGCACGACACCATCGCCGCACTCAACGTACACTGGGGCACCGACGAACACATGCGCGGCGGCACCAACAACCTG
TTTACTTGGCAACAAGGGCTGGAACGCCTCGCCCTCGGCTGGATGCTGCCCGAAAGCCGCCACCCGCTGTGGCAGCGCAT
CAGCGCATGGCACGCCAACCCCAACCACACCGCCGTACTCAGCCGCTTCAGCGCACTTATCCGCACCCTCACCGCAACCG
CCCGCCTGTGGCGGCAACCCGCCTCCGTGCCGGAATGGACGGAACGCATCCGCAACCTTACCGCCGCCCTGACCGCCACC
GATACAGACGGCCAATACGCTTGGCAGCAACTTACCCAAGCCCTCGCCCGCTGGCAGGAAGAAGCCGAACTGGCAGGCTT
TAGCGGCACCTTGCCGCGCCAAACCGTTATCCGTCACATCGGCCGCTTTCTCGACAGCGAAAGCCAAGCCGGATTTCTAC
GCGGCGGCATCACCTTTTGCAGCATGGTGCCGATGCGCAGCCTGCCCTTCAAAATGATCTGCCTGCTCGGCCTCAACGAC
GGCGACTTCCCCCGCAACACCAAAGCCGCCGCCTTCGACCTCATCGCCCGCCACCCGCAAAAAGGCGACCGCGCCCGCCG
CGACGACGACCGCTACCTGTTTCTCGAAGCCGTGATGAGCGCGCGCGACATCCTTTACCTTTCCTACATCGGCCGCGACA
TCCGCAACGACCAGCCCCTCGCCCCCTCCGCCCTGCTCGGCGAACTCATCGACACCCTTGCCGCCATGACCGGCCGTTCC
GCGCAAGAGCTGCACACCCATTGGGTGAAACAACACCCGCTGCAACCCTTTTCACACCGCTATTTCACCCCCGAAAGCGC
AGGTTCAGACGGCCTTACCAGCACCCGCCGCGACTACGCCGAAGCCCTCAACCGCCCGCCCGAACCCGAAGCTCCGTTCT
TCACCGAACCGCTCGACGATACCGCCGCAGCCGACAACACCGTTGCCCACCACAGCTTTATCCGCTTCTGGAAAAACCCC
GTACGCACTTGGCTGCAACACACGCTCCACTGGCAAAAACCCTACCGCGACGCCGCATGGGAAGCCGCCGAACCCTTCGA
GCCGCAACAAAGCGCGCGCATCACCGCCGAATACACCGCCGCCCGCCGCCACAACGAAGACTTCGGCCGCCTCGAAAGCC
GTCTGCAAGCCGAAAGCCTGCTGCCCGCAGGCGAATTGGGCGCACTTTGGCAAAACCGTTTTCAAACCGCCGCCAAATCG
CTCGACCACACCTTAGTCACCAGCCCCAAACTGCCGCCCGCGCCCTACACCCTCGCCGTCGGCGCGCACACCCTCGAAGG
CAGCCTCAACCATCTTTACCGCCACGGGCAGATTTACTTCCCCGGTCAAGCATTCAAAGCACCCGAACAGCTCGCCGTTT
TACTCGAACATCTGATTTTCTGCGCCGTGAGGCCGTCTGAAACCGGGCAATACCAAACCCATATCCTGCTGCCCGAACAA
CCGCAAACCCTCGCCGAGATTCCACAACAAGAAGCCGTCGAAGCCCTGCAAAACTGGCTGGAGTATTACCAAATCGGCCA
AACCCGCCCGCTGCCGTTCTTCCCGCGCGTCAATTACAAAGCTGCCCAAGAATGGAATAAAAGCAACGACCAAAGTAAAG
CCTTAAACGAAGCCTATAAGCTTTACCACGGCGGCACGCACTCCGCCGGCCAAAAAAGCTATCCCGAAGTTGCACTGGTG
TTCGGCGGCAACGAAGAAGACCCCACCGCCTCCACCCTCTTTTGGAACATCACCGCAGACCTGCTTGCCCCGCTCATCCG
ACTCACCACCCCGCCGGCAGACAATGATTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-314)

RecC C-terminal domain (RecC_C)

(787-1004)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

61.481

99.164

0.61

Multiple sequence alignment