Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | VCBK1071_RS01545 | Genome accession | NZ_LT897797 |
| Coordinates | 322121..322639 (+) | Length | 172 a.a. |
| NCBI ID | WP_000792033.1 | Uniprot ID | - |
| Organism | Vibrio cholerae isolate Vibrio cholerae str. BC1071 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 317121..327639
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VCBK1071_RS01525 (VCBK1071_00294) | - | 317338..319815 (-) | 2478 | WP_000668738.1 | penicillin-binding protein 1A | - |
| VCBK1071_RS01530 (VCBK1071_00295) | pilM | 319958..320974 (+) | 1017 | WP_095471438.1 | type IV pilus assembly protein PilM | Machinery gene |
| VCBK1071_RS01535 (VCBK1071_00296) | pilN | 320964..321548 (+) | 585 | WP_172440033.1 | PilN domain-containing protein | Machinery gene |
| VCBK1071_RS01540 (VCBK1071_00297) | pilO | 321541..322131 (+) | 591 | WP_000157688.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| VCBK1071_RS01545 (VCBK1071_00298) | pilP | 322121..322639 (+) | 519 | WP_000792033.1 | pilus assembly protein PilP | Machinery gene |
| VCBK1071_RS01550 (VCBK1071_00299) | pilQ | 322665..324380 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| VCBK1071_RS01555 (VCBK1071_00300) | aroK | 324567..325091 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| VCBK1071_RS01560 (VCBK1071_00301) | aroB | 325119..326204 (+) | 1086 | WP_172440034.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19074.22 Da Isoelectric Point: 10.0857
>NTDB_id=1146650 VCBK1071_RS01545 WP_000792033.1 322121..322639(+) (pilP) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATSYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATSYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=1146650 VCBK1071_RS01545 WP_000792033.1 322121..322639(+) (pilP) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAGCCCATTTTAGAGTTTGAAGCCACGT
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTAGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAGTATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAGCCCATTTTAGAGTTTGAAGCCACGT
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTAGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAGTATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
99.419 |
100 |
0.994 |
| pilP | Vibrio campbellii strain DS40M4 |
56.977 |
100 |
0.57 |