Detailed information NTG1146444

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PD885_RS15920
• Genome accession: NZ_LT853882
• Coordinates: 3414964..3416352 (+)
• Length: 462 a.a.
• NCBI ID: WP_002812259.1
• Uniprot ID: A0A1Y6HL39
• Organism: Xanthomonas fragariae strain PD885
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3417273..3418610	3414964..3416352	flank	921

Gene organization within MGE regions

Location: 3414964..3418610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PD885_RS15920 (PD885_03198)	pilR	3414964..3416352 (+)	1389	WP_002812259.1	sigma-54 dependent transcriptional regulator	Regulator
PD885_RS15925 (PD885_03199)	-	3416426..3416608 (+)	183	WP_002812262.1	YhfG family protein	-
PD885_RS15930 (PD885_03200)	-	3416705..3417202 (+)	498	WP_231892748.1	Fic family protein	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49968.38 Da
• Isoelectric Point: 6.5717

>NTDB_id=1146444 PD885_RS15920 WP_002812259.1 3414964..3416352(+) (pilR) [Xanthomonas fragariae strain PD885]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPEQASRLLGDSSAMESLRATIGKVARSQ
APVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADTPGLFQAAHGGTLFLDEV
AELPLQMQVKLLRAIQEKSVRPVGASSEMLVDVRILSATHKDLGELVSNGRFRHDLYYRINVIELRVPPLRERGGDLPQL
AAAIIARLAHSHGRPIPLLTQSALDALDHYSFPGNVRELENILERALALAEADQISTSDLRLPAHGGHRLAAPSGSAAVE
PPEAVVDIDPASSALPSYIEQLERAAIKKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=1146444 PD885_RS15920 WP_002812259.1 3414964..3416352(+) (pilR) [Xanthomonas fragariae strain PD885]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTCGGCCGCAT
GGGCTTGCGTATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGGATCGAACTGGTCACCGAGATCGCCAAGCACTATCCGCAGACTCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGATCTGGCAGTGGAAGCCTTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACCGCCTG
AACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCCCGCAGCCAG
GCACCGGTCTACATCGTCGGCGAATCGGGCGTTGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGAGCGCGCGC
GGCCGGGCCGTTCGTCCCGGTCAACTGCGGCGCCATTCCCGCCGAACTGATGGAGAGCGAATTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGGGCGCATGCCGACACGCCGGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGACGAAGTG
GCCGAGCTGCCGCTGCAGATGCAGGTCAAACTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCATCCAG
CGAAATGCTGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGATCTCGGCGAGCTGGTCTCCAACGGCCGTTTTCGTC
ACGACCTGTACTACCGCATCAACGTCATCGAACTGCGGGTCCCACCGCTGCGCGAACGCGGTGGCGACCTCCCGCAACTG
GCCGCCGCCATCATCGCGCGCCTGGCGCATAGCCATGGCCGCCCGATTCCGCTACTGACCCAATCCGCACTCGATGCGCT
CGACCACTACAGCTTCCCCGGCAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCACTGGCCGAAGCCGACC
AGATCAGCACCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGTCTCGCCGCCCCCTCCGGCAGCGCCGCTGTCGAA
CCGCCCGAAGCCGTCGTCGACATCGACCCCGCCTCTTCCGCGCTACCGTCCTACATCGAGCAACTGGAACGCGCCGCGAT
CAAGAAAGCCCTAGAAGAAAATCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATTACGTTCCGCGCGCTGCGCT
ACAAGCTCAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-305)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

3D structure

• AlphaFold DB: A0A1Y6HL39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.907	99.784	0.628
pilR	Acinetobacter baumannii strain A118	49.462	100	0.498