Detailed information NTG1146427

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NBC2815_RS16000
• Genome accession: NZ_LT853880
• Coordinates: 3455118..3456506 (+)
• Length: 462 a.a.
• NCBI ID: WP_002812259.1
• Uniprot ID: A0A1Y6HL39
• Organism: Xanthomonas fragariae strain NBC2815
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	3457427..3458794	3455118..3456506	flank	921

Gene organization within MGE regions

Location: 3455118..3458794

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBC2815_RS16000 (NBC2815_03194)	pilR	3455118..3456506 (+)	1389	WP_002812259.1	sigma-54 dependent transcriptional regulator	Regulator
NBC2815_RS16005 (NBC2815_03195)	-	3456580..3456762 (+)	183	WP_088061932.1	YhfG family protein	-
NBC2815_RS16010 (NBC2815_03196)	-	3456859..3457356 (+)	498	WP_231895734.1	Fic family protein	-
NBC2815_RS16015 (NBC2815_03197)	-	3457427..3458794 (-)	1368	WP_088062623.1	IS5 family transposase	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49968.38 Da
• Isoelectric Point: 6.5717

>NTDB_id=1146427 NBC2815_RS16000 WP_002812259.1 3455118..3456506(+) (pilR) [Xanthomonas fragariae strain NBC2815]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPEQASRLLGDSSAMESLRATIGKVARSQ
APVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADTPGLFQAAHGGTLFLDEV
AELPLQMQVKLLRAIQEKSVRPVGASSEMLVDVRILSATHKDLGELVSNGRFRHDLYYRINVIELRVPPLRERGGDLPQL
AAAIIARLAHSHGRPIPLLTQSALDALDHYSFPGNVRELENILERALALAEADQISTSDLRLPAHGGHRLAAPSGSAAVE
PPEAVVDIDPASSALPSYIEQLERAAIKKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=1146427 NBC2815_RS16000 WP_002812259.1 3455118..3456506(+) (pilR) [Xanthomonas fragariae strain NBC2815]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTCGGCCGCAT
GGGCTTGCGTATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGGATCGAACTGGTCACCGAGATCGCCAAGCACTATCCGCAGACTCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGATCTGGCAGTGGAAGCCTTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACCGCCTG
AACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCCCGCAGCCAG
GCACCGGTCTACATCGTTGGCGAATCGGGCGTTGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGAGCGCGCGC
GGCCGGGCCGTTCGTCCCGGTCAACTGCGGCGCCATTCCCGCCGAACTGATGGAGAGCGAATTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGGGCGCATGCCGACACGCCGGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGACGAAGTG
GCCGAGCTGCCGCTGCAGATGCAGGTCAAACTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCATCCAG
CGAAATGCTGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGATCTCGGCGAGCTGGTCTCCAACGGCCGTTTTCGTC
ACGACCTGTACTACCGCATCAACGTCATCGAACTGCGGGTCCCACCGCTGCGCGAACGCGGTGGCGACCTCCCGCAACTG
GCCGCCGCCATCATCGCGCGCCTGGCGCATAGCCATGGCCGCCCGATTCCGCTACTGACCCAATCCGCACTCGATGCGCT
CGACCACTACAGCTTCCCCGGCAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCACTGGCCGAAGCCGACC
AGATCAGCACCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGTCTCGCCGCCCCCTCCGGCAGCGCCGCTGTCGAA
CCGCCCGAAGCCGTCGTCGACATCGACCCCGCCTCTTCCGCGCTACCGTCCTACATCGAGCAACTGGAACGCGCCGCGAT
CAAGAAAGCCCTAGAAGAAAATCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATTACGTTCCGCGCGCTGCGCT
ACAAGCTCAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-305)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

3D structure

• AlphaFold DB: A0A1Y6HL39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.907	99.784	0.628
pilR	Acinetobacter baumannii strain A118	49.462	100	0.498