Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CS885_RS07040 Genome accession   NZ_LT838273
Coordinates   1430044..1430844 (+) Length   266 a.a.
NCBI ID   WP_089086647.1    Uniprot ID   -
Organism   Helicobacter pylori isolate HE93/10_v1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1425044..1435844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS885_RS07005 pseH 1425543..1426085 (+) 543 WP_079341521.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  CS885_RS07010 - 1426018..1426956 (-) 939 WP_089086644.1 tetraacyldisaccharide 4'-kinase -
  CS885_RS07015 - 1426953..1427735 (-) 783 WP_089086645.1 NAD+ synthase -
  CS885_RS07025 ilvC 1427984..1428976 (+) 993 WP_089086646.1 ketol-acid reductoisomerase -
  CS885_RS07030 minD 1429001..1429807 (+) 807 WP_001019079.1 septum site-determining protein MinD -
  CS885_RS07035 minE 1429804..1430037 (+) 234 WP_033592300.1 cell division topological specificity factor MinE -
  CS885_RS07040 dprA 1430044..1430844 (+) 801 WP_089086647.1 DNA-processing protein DprA Machinery gene
  CS885_RS07045 dprB 1430841..1431245 (+) 405 WP_089086648.1 Holliday junction resolvase RuvX Machinery gene
  CS885_RS07050 - 1431533..1431771 (+) 239 Protein_1335 sel1 repeat family protein -
  CS885_RS07055 - 1431969..1432307 (+) 339 WP_000699880.1 hypothetical protein -
  CS885_RS07060 - 1432291..1432851 (+) 561 WP_089086649.1 hypothetical protein -
  CS885_RS07065 - 1432953..1433834 (-) 882 WP_089086650.1 RluA family pseudouridine synthase -
  CS885_RS07070 recJ 1433834..1435384 (-) 1551 WP_089086651.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29825.74 Da        Isoelectric Point: 8.5952

>NTDB_id=1146409 CS885_RS07040 WP_089086647.1 1430044..1430844(+) (dprA) [Helicobacter pylori isolate HE93/10_v1]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1146409 CS885_RS07040 WP_089086647.1 1430044..1430844(+) (dprA) [Helicobacter pylori isolate HE93/10_v1]
ATGAAAAGCCATTTCCAATACAGTGCGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACGAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCCTGATTTTAAGCGAATATGAAAAAGACTTCATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTAGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCTTGAACGAGAGCGACGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGTGCGAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAGCGTATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.992

100

0.97
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment