Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B5449_RS00980 Genome accession   NZ_LT821227
Coordinates   208921..210675 (-) Length   584 a.a.
NCBI ID   WP_197682078.1    Uniprot ID   -
Organism   Phoenicibacter congonensis strain Marseille-P3241     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 203921..215675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5449_RS00960 - 203966..205099 (+) 1134 WP_079535269.1 hypothetical protein -
  B5449_RS00965 - 205145..206449 (+) 1305 WP_079535270.1 adenylosuccinate synthase -
  B5449_RS00970 - 206567..207046 (+) 480 WP_157887267.1 prepilin peptidase -
  B5449_RS00975 rcrQ 207105..208934 (-) 1830 WP_079535272.1 ABC transporter ATP-binding protein Regulator
  B5449_RS00980 rcrP 208921..210675 (-) 1755 WP_197682078.1 ABC transporter ATP-binding protein Regulator
  B5449_RS00985 - 210926..211300 (-) 375 WP_197682079.1 metalloregulator ArsR/SmtB family transcription factor -
  B5449_RS00990 - 211405..213786 (+) 2382 WP_079535274.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64434.70 Da        Isoelectric Point: 6.9632

>NTDB_id=1146264 B5449_RS00980 WP_197682078.1 208921..210675(-) (rcrP) [Phoenicibacter congonensis strain Marseille-P3241]
MFKYLSKADWARLFVALIFLVAGVGLDLKLPDYMREITTLVQTQGSALSEVLIAGGKMLLCAFAGLGTTFVVGFFVAKVA
AGLARVLREKVFFKTIDFSRSEMSEFSVASLITRTTNDVQQIQLCIAIGAQAVARAPIMAVWAAVKIMGKSWQWAAITGG
AVVILVVVMGVVTSVVMPKFRMMQQLTDNLNRVSREDLTGLRVVRAYNAEGYQQEKFEAANNALTRTQLFTSRRMSLMFP
TIQLIMSGLTLAIYWSGVYIINGANLPARLALFSDMVVFSSYAIQIVMSFMMIVMVFVIAPRAIVAAKRINEVISTDVTV
RDGNEIFSDDKQTGAIEFKNVSFQYPDAEEPVLHDINIKIHKGETVAFIGSTGSGKSTLIQLIPRFYDCSDGEVIVDGKN
VRDVTLDSLRKKVGFVTQKPIMFMGTIESNVAYGSEGEVSESRVREALDIAMATEFVDKEEDGIKAEVSQGGTNFSGGQK
QRLSIARAIYKNPEIYVFDDSFSALDYKTDKLLRHALEEKTSNATKLIVAQRIGTIIDADQIFVMDSGRVVGHGRHADLL
KTCEVYREIAESQLSEEELKNASR

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=1146264 B5449_RS00980 WP_197682078.1 208921..210675(-) (rcrP) [Phoenicibacter congonensis strain Marseille-P3241]
TTGTTTAAATATTTATCTAAAGCTGATTGGGCGCGACTTTTTGTAGCGCTCATTTTTCTCGTGGCAGGGGTTGGTCTTGA
CCTTAAATTGCCAGATTACATGCGTGAAATCACTACACTCGTTCAAACGCAGGGAAGTGCTTTGTCTGAAGTCCTCATTG
CTGGGGGCAAAATGTTGCTTTGTGCATTTGCTGGCCTGGGAACTACATTTGTCGTAGGCTTCTTTGTCGCAAAAGTTGCG
GCTGGTCTTGCTCGTGTTCTTCGAGAAAAAGTCTTTTTTAAAACAATTGATTTTTCGCGCAGTGAGATGTCGGAATTTTC
TGTTGCTAGTTTAATTACAAGAACTACAAATGATGTTCAGCAAATTCAACTTTGCATTGCAATTGGAGCGCAAGCTGTTG
CGCGAGCGCCAATTATGGCTGTTTGGGCAGCTGTAAAAATCATGGGAAAAAGCTGGCAGTGGGCAGCAATAACTGGCGGG
GCAGTTGTGATTCTTGTAGTTGTGATGGGCGTTGTCACATCGGTGGTCATGCCAAAGTTTCGAATGATGCAACAGCTAAC
CGACAACTTGAATCGAGTATCACGTGAAGACTTAACAGGTTTGAGAGTTGTTAGAGCTTATAACGCTGAAGGCTATCAGC
AGGAAAAGTTCGAAGCGGCTAACAACGCTCTAACCCGAACTCAATTGTTTACTTCACGCAGAATGTCGCTGATGTTCCCA
ACAATTCAACTCATTATGTCAGGGCTCACGCTTGCGATTTACTGGTCTGGTGTCTACATCATCAATGGAGCCAATCTTCC
AGCAAGACTTGCCCTCTTTAGTGACATGGTCGTTTTCTCTTCATATGCAATTCAAATTGTCATGTCGTTCATGATGATAG
TTATGGTGTTTGTTATTGCCCCTCGCGCTATTGTTGCGGCAAAACGAATTAATGAGGTAATTTCAACCGACGTGACAGTT
CGTGATGGAAATGAAATTTTTTCTGACGACAAACAGACTGGCGCAATTGAGTTTAAGAATGTCAGTTTTCAATATCCTGA
TGCTGAAGAACCTGTTCTTCATGACATTAATATCAAGATTCATAAAGGCGAAACTGTTGCTTTTATTGGGTCGACGGGCA
GCGGAAAGAGCACCCTCATTCAACTCATTCCTCGATTCTATGACTGCAGTGATGGCGAGGTTATCGTCGATGGCAAGAAC
GTTCGTGACGTTACGCTAGACTCTCTCAGAAAAAAAGTTGGTTTTGTTACACAAAAGCCAATTATGTTTATGGGGACAAT
CGAGAGCAATGTTGCCTATGGCAGCGAAGGAGAAGTGAGTGAATCGCGCGTGCGTGAAGCTCTCGACATTGCGATGGCGA
CAGAATTTGTCGACAAAGAAGAAGATGGCATAAAGGCAGAAGTGTCGCAAGGCGGCACAAATTTTTCAGGTGGTCAAAAG
CAGCGTCTTTCGATAGCTAGAGCGATTTATAAAAATCCTGAAATTTATGTTTTTGATGATTCTTTTTCAGCACTTGACTA
CAAGACCGACAAATTGTTGCGTCATGCTTTGGAAGAAAAAACGAGCAATGCTACTAAGCTAATCGTTGCGCAAAGAATTG
GAACAATCATTGATGCTGATCAAATTTTTGTAATGGATTCGGGCAGAGTTGTTGGTCACGGTCGACATGCTGATTTATTA
AAAACTTGTGAGGTCTACAGGGAAATTGCAGAATCGCAGTTGTCAGAGGAGGAATTGAAGAATGCCTCAAGATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(353-501)

ABC transporter transmembrane region (ABC_membrane)

(14-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.076

100

0.5

Multiple sequence alignment