Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B5449_RS00975 Genome accession   NZ_LT821227
Coordinates   207105..208934 (-) Length   609 a.a.
NCBI ID   WP_079535272.1    Uniprot ID   -
Organism   Phoenicibacter congonensis strain Marseille-P3241     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 202105..213934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5449_RS00955 - 202806..203954 (+) 1149 WP_079535268.1 immunoglobulin-like domain-containing protein -
  B5449_RS00960 - 203966..205099 (+) 1134 WP_079535269.1 hypothetical protein -
  B5449_RS00965 - 205145..206449 (+) 1305 WP_079535270.1 adenylosuccinate synthase -
  B5449_RS00970 - 206567..207046 (+) 480 WP_157887267.1 prepilin peptidase -
  B5449_RS00975 rcrQ 207105..208934 (-) 1830 WP_079535272.1 ABC transporter ATP-binding protein Regulator
  B5449_RS00980 rcrP 208921..210675 (-) 1755 WP_197682078.1 ABC transporter ATP-binding protein Regulator
  B5449_RS00985 - 210926..211300 (-) 375 WP_197682079.1 metalloregulator ArsR/SmtB family transcription factor -
  B5449_RS00990 - 211405..213786 (+) 2382 WP_079535274.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66935.44 Da        Isoelectric Point: 6.4185

>NTDB_id=1146263 B5449_RS00975 WP_079535272.1 207105..208934(-) (rcrQ) [Phoenicibacter congonensis strain Marseille-P3241]
MPQDNEEIKLPKRPRRNMGPGSKFVGGEKANNFGSAIKSLMLYAKNWLPGIIVASLLAVCGCALNLAGPGKLSEITDLIA
QGIASSIDVAAVVKIAIILTIIYSVAWLCNFLQNFVMATVTQRLSKKLRTDISLKIDKLPLKYFDGTSVGNVMSRISNDV
DMIGQTLNQSLGALITAFVMFFGSLFCMFTTNWILALSGVGASILGFSIMLVIIKKSQKYFNQQQQSLGSLNGHIEETYS
GHAVVKAYTAEDSVKKEFRRINNELYNCAWKSQFLSGLMQPLMGFVGNLGYVVVCVVGAVLTINGIISFGVIVAFMVYVR
QFTQPLSQFAQAANSLQSAAAASERIFEILNEDEMETEKDNIQCLDNVAGAVRFEHVRFGYDPEDIIIQDFSADVKPGQK
VAIVGPTGAGKTTLINLLMRFYELQGGKIYIDGIETTKLSRQAIHDQFCMVLQDAWIFEGTIRENIVYSKEGVTDEEVIN
ACKAVGLHHFIQTLPKGYETVLNDSSALSAGQRQLVTIARAMIKNAPMLILDEATSSVDTRTEQLIQQSMDTLMVGRTSF
VIAHRLSTIKNADKILVLNHGEIVEQGNHEELLAKGGFYATLYNSQFEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=1146263 B5449_RS00975 WP_079535272.1 207105..208934(-) (rcrQ) [Phoenicibacter congonensis strain Marseille-P3241]
ATGCCTCAAGATAACGAGGAGATAAAACTACCTAAACGACCTCGGCGCAACATGGGACCTGGCTCAAAGTTTGTCGGAGG
GGAAAAGGCGAATAACTTTGGAAGCGCGATTAAAAGCCTGATGCTTTATGCAAAAAATTGGCTTCCAGGAATTATTGTTG
CATCATTGCTTGCGGTTTGTGGATGTGCGCTAAATCTAGCAGGCCCAGGAAAACTTTCGGAAATCACAGACCTCATTGCT
CAAGGCATCGCGTCAAGCATCGATGTAGCTGCAGTCGTCAAAATAGCGATTATCCTCACTATCATCTATTCAGTTGCATG
GCTGTGCAACTTTTTGCAGAACTTTGTTATGGCAACAGTCACGCAAAGGCTCTCGAAAAAGTTGCGCACCGACATTTCGT
TGAAAATTGACAAATTGCCTTTGAAGTATTTTGATGGAACTTCAGTTGGTAATGTTATGTCACGCATCTCAAACGATGTT
GACATGATTGGACAAACGCTCAATCAAAGTCTAGGTGCATTAATTACTGCATTCGTGATGTTTTTTGGCTCGCTATTCTG
TATGTTCACCACAAACTGGATTTTGGCGCTTTCGGGCGTGGGAGCATCAATTCTTGGTTTCTCAATCATGCTTGTGATCA
TCAAAAAATCACAGAAATATTTCAACCAGCAACAACAATCGCTCGGTTCTCTTAATGGGCACATTGAGGAAACCTATTCT
GGCCACGCGGTGGTTAAAGCCTACACAGCAGAAGACTCTGTGAAGAAAGAATTTAGACGCATCAACAATGAACTTTATAA
TTGCGCGTGGAAGAGCCAGTTTTTAAGTGGGCTGATGCAGCCTCTCATGGGTTTTGTTGGCAACTTGGGATATGTTGTTG
TTTGTGTTGTCGGTGCAGTTCTCACCATTAACGGCATCATTTCTTTTGGCGTGATTGTGGCTTTTATGGTTTATGTTCGT
CAATTCACGCAGCCTCTCAGTCAATTTGCTCAAGCTGCAAATTCGCTGCAAAGTGCTGCAGCTGCGTCAGAGAGGATTTT
TGAAATCCTAAATGAAGATGAAATGGAAACTGAGAAGGACAATATTCAATGTTTAGATAACGTTGCTGGCGCAGTTAGGT
TTGAGCATGTTCGCTTTGGTTATGACCCTGAAGATATCATCATCCAAGACTTCTCTGCTGATGTTAAGCCTGGTCAGAAG
GTTGCAATCGTTGGGCCAACAGGTGCAGGAAAGACAACTTTAATCAATTTGCTCATGCGTTTCTATGAGTTGCAAGGTGG
AAAAATCTACATTGATGGAATTGAGACCACGAAGCTCTCTCGTCAAGCAATACATGATCAATTCTGCATGGTTTTGCAAG
ATGCATGGATTTTTGAAGGGACAATTCGCGAGAACATCGTTTATTCAAAAGAGGGAGTGACCGACGAAGAGGTCATAAAC
GCATGCAAGGCAGTTGGCCTGCATCACTTCATTCAAACGCTCCCTAAAGGCTATGAAACAGTGCTCAATGACAGCTCTGC
TTTGTCGGCGGGACAGCGTCAACTTGTCACGATTGCGCGCGCAATGATCAAGAATGCCCCGATGCTAATTCTCGATGAAG
CAACAAGTAGTGTTGACACGCGAACCGAGCAATTGATTCAGCAGTCAATGGACACATTGATGGTGGGAAGAACCTCATTT
GTGATTGCCCACAGGCTTTCGACAATCAAAAACGCCGACAAGATTCTCGTCTTGAATCATGGAGAAATTGTTGAGCAAGG
AAATCACGAGGAACTCCTTGCCAAAGGTGGTTTTTACGCCACTCTTTATAACAGCCAGTTTGAAGAATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(52-326)

ABC transporter (ABC_tran)

(389-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.332

95.074

0.498

Multiple sequence alignment