Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   EDCC5055_RS02740 Genome accession   NZ_LT671859
Coordinates   553155..553724 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate Clinical isolate     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 548155..558724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EDCC5055_RS02715 (EDCC5055_00499) cysE 549368..550015 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  EDCC5055_RS02720 (EDCC5055_00500) cysS 549999..551399 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  EDCC5055_RS02725 (EDCC5055_00501) - 551392..551796 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  EDCC5055_RS02730 (EDCC5055_00502) rlmB 551804..552550 (+) 747 WP_015581794.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EDCC5055_RS02735 (EDCC5055_00503) - 552550..553074 (+) 525 WP_000664738.1 NYN domain-containing protein -
  EDCC5055_RS02740 (EDCC5055_00504) sigH 553155..553724 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  EDCC5055_RS02745 rpmG 553839..553982 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  EDCC5055_RS02750 (EDCC5055_00505) secE 554038..554220 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  EDCC5055_RS02755 (EDCC5055_00506) nusG 554233..554781 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  EDCC5055_RS02760 (EDCC5055_00507) rplK 554962..555384 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  EDCC5055_RS02765 (EDCC5055_00508) rplA 555592..556284 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  EDCC5055_RS02770 (EDCC5055_00510) rplJ 556556..557056 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  EDCC5055_RS02775 (EDCC5055_00511) rplL 557099..557467 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  EDCC5055_RS02780 (EDCC5055_00512) - 557642..558250 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=1146028 EDCC5055_RS02740 WP_000872873.1 553155..553724(+) (sigH) [Staphylococcus aureus isolate Clinical isolate]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1146028 EDCC5055_RS02740 WP_000872873.1 553155..553724(+) (sigH) [Staphylococcus aureus isolate Clinical isolate]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment