Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   BUC38_RS10585 Genome accession   NZ_LT671674
Coordinates   2168501..2170294 (-) Length   597 a.a.
NCBI ID   WP_044691188.1    Uniprot ID   A0A123TMT9
Organism   Streptococcus suis strain LS9N     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2163501..2175294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS10555 - 2163505..2163870 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  BUC38_RS10565 - 2164309..2165211 (-) 903 WP_002942329.1 ABC transporter permease -
  BUC38_RS10570 opp4B 2165225..2166181 (-) 957 WP_024397663.1 oligopeptide ABC transporter permease -
  BUC38_RS10575 - 2166183..2167124 (-) 942 WP_029694212.1 ATP-binding cassette domain-containing protein -
  BUC38_RS10580 - 2167127..2168125 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  BUC38_RS10585 oppA 2168501..2170294 (-) 1794 WP_044691188.1 oligopeptide ABC transporter substrate-binding protein Regulator
  BUC38_RS10590 pbp3 2170509..2171749 (+) 1241 Protein_2003 D-alanyl-D-alanine carboxypeptidase PBP3 -
  BUC38_RS10595 sufB 2171985..2173400 (-) 1416 WP_024379508.1 Fe-S cluster assembly protein SufB -
  BUC38_RS10600 sufU 2173686..2174126 (-) 441 WP_044691192.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 65881.58 Da        Isoelectric Point: 4.4090

>NTDB_id=1146013 BUC38_RS10585 WP_044691188.1 2168501..2170294(-) (oppA) [Streptococcus suis strain LS9N]
MKKTTKLFALAGITLLSASVLAACGSKSSSSSQKQELSFPSEVKQDGSAVADAQLKYALVSATTSSGLLIDELTENNIDS
TFGGMVDISMFGYDGDRKLDDSGLAKAEFDVEGKKITVSLTGKDYKWSDGQPFTINDYIFTIKSMASKDYTGVRFDDKFL
NIEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYVQPEHIYKDIPVADWEKSEYSRTAKLVGMGPW
KIKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEY
ISFNFGKYDESAKKNVMDENAKMNDVKLRQAIAYAIDTKTAGDSLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAK
KLLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINSFYDAIQANDPAI
DMYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLNAISSTESFDEKKNVENYKAWQKYAYEQAFAIPTFESESIT
ALNKRVKNYDSNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=1146013 BUC38_RS10585 WP_044691188.1 2168501..2170294(-) (oppA) [Streptococcus suis strain LS9N]
ATGAAAAAGACAACAAAACTCTTTGCTCTAGCAGGTATTACTCTTTTATCTGCATCTGTTTTGGCAGCTTGTGGCTCTAA
GTCATCTTCTAGCTCACAAAAACAAGAATTATCATTCCCGTCAGAAGTGAAACAAGATGGTTCAGCTGTTGCGGACGCAC
AATTGAAATACGCGTTGGTGTCAGCTACAACTTCATCTGGTCTCTTGATTGACGAATTGACTGAAAACAATATTGATTCA
ACATTTGGTGGAATGGTTGATATTTCAATGTTCGGTTACGATGGTGATCGTAAGTTGGATGACTCAGGTCTTGCAAAAGC
TGAGTTTGATGTAGAAGGTAAGAAAATCACTGTTAGCTTGACTGGTAAAGACTACAAGTGGTCTGATGGTCAGCCATTTA
CTATCAATGACTACATCTTCACTATCAAGTCAATGGCAAGCAAAGACTATACTGGTGTCCGTTTTGATGACAAATTCTTG
AACATTGAAGGTATGCAGGAATTTGTTGACGGAAAAGCGTCAGACATCTCTGGTATTAAGAAAGTTGACGACTACACAGT
AGAATTGACTGTGAAAGAAATGTCTCCTTCTATGATGTATGCCGGTGGTGATGTACCTGCCTATGTTCAACCAGAACACA
TCTATAAAGACATTCCTGTTGCAGATTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGG
AAAATCAAGGAAATCGTAAACGGTGAGTCTATCACTTATGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAAC
AAGCTCATTGAAGATTGACATCGTATCTCCAGATACTATTGTTTCTGAAATGAAAGCTGGTAACTATGACATCGCAGATA
TGCCTGTTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTTCTTTGGACTCAGCTTATGAATAC
ATTTCATTTAATTTTGGTAAATATGACGAGTCTGCTAAGAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAA
ACTTCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGACTCATTGTACAATGGTCTTTACCACCCTGCAA
ACTCATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAA
AAACTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGAT
TACCTTTGCTGCTCGTAAACGTACGGAAGCAAACGAAGCACTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTTGGCT
TGAATGTTGAATTGTACACAGGCCGTACAGTTGAAATCAACTCATTCTACGATGCAATTCAAGCAAACGACCCTGCAATT
GATATGTATGCTGGTGGTTGGTCTACTGGTTACGATCCAAACCCAACAGGTACATGGGGTCCAATCGCTGCCTTCAACAT
GTCACGTTTCGTCTCTGATGAAAATACTAAGTTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGAGAAGAAAAATG
TTGAGAACTATAAGGCTTGGCAAAAATATGCTTACGAACAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATCACA
GCCCTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGA
ACTTACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(104-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A123TMT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

91.457

100

0.915

Multiple sequence alignment