Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   BUC38_RS07005 Genome accession   NZ_LT671674
Coordinates   1413061..1414287 (-) Length   408 a.a.
NCBI ID   WP_002943186.1    Uniprot ID   A0A116M5Y1
Organism   Streptococcus suis strain LS9N     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408061..1419287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS06980 - 1408366..1409688 (-) 1323 WP_044690041.1 excalibur calcium-binding domain-containing protein -
  BUC38_RS06985 - 1409823..1410005 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  BUC38_RS06990 lepA 1410055..1411886 (-) 1832 Protein_1328 translation elongation factor 4 -
  BUC38_RS06995 ndk 1411982..1412395 (-) 414 WP_043024881.1 nucleoside-diphosphate kinase -
  BUC38_RS07000 yihA 1412418..1413005 (-) 588 WP_014638915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  BUC38_RS07005 clpX 1413061..1414287 (-) 1227 WP_002943186.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  BUC38_RS07015 - 1414485..1414997 (-) 513 WP_044690045.1 dihydrofolate reductase -
  BUC38_RS07020 - 1415173..1416012 (-) 840 WP_029943509.1 thymidylate synthase -
  BUC38_RS07025 - 1416065..1416367 (-) 303 WP_044690046.1 hypothetical protein -
  BUC38_RS07030 - 1416379..1416657 (-) 279 WP_044690047.1 hypothetical protein -
  BUC38_RS07045 - 1417049..1418008 (-) 960 WP_044690049.1 ROK family glucokinase -
  BUC38_RS07050 - 1418102..1418437 (-) 336 WP_024376975.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45352.85 Da        Isoelectric Point: 4.6382

>NTDB_id=1146002 BUC38_RS07005 WP_002943186.1 1413061..1414287(-) (clpX) [Streptococcus suis strain LS9N]
MAVKHTHEFIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1146002 BUC38_RS07005 WP_002943186.1 1413061..1414287(-) (clpX) [Streptococcus suis strain LS9N]
ATGGCTGTTAAGCATACACATGAGTTTATTTATTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTTAAAAAAATTATTGC
TGGTAACAATGTGTTCATCTGTAATGAATGTGTGGAATTAGCTCAGGAAATCATTCGTGAGGAATTGGCAGAAGAAGTGT
TGACTGATTTGGCCGATACACCTAAACCACAAGAACTTCTTAACATTTTAAACAATTATGTCATTGGGCAAGACCGTGCA
AAACGTGCCTTGGCAGTAGCTGTTTACAACCACTACAAGCGTATCAATTTCCAAGATAGTCGGGACGAAAACGATGTCGA
TTTGCAAAAATCAAACATCCTGATGATTGGTCCAACCGGTTCGGGTAAGACTTTCTTGGCTCAAACCTTGGCCAAAAGTT
TGAATGTACCATTCGCCATTGCAGACGCAACTGCCTTAACAGAGGCGGGGTATGTCGGTGAGGACGTTGAAAATATCCTT
CTCAAACTCTTACAGGCGGCGGATTTCAATATTGATCGGGCAGAACGAGGGATTATCTATGTGGATGAGATTGATAAGAT
TGCCAAAAAGGGTGAAAATGTATCCATTACCCGCGATGTTTCGGGCGAAGGTGTCCAACAGGCTCTCTTGAAAATCATAG
AGGGAACGGTTGCCAGCGTGCCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGTGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAG
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116M5Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574

Multiple sequence alignment