Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   BUC38_RS02555 Genome accession   NZ_LT671674
Coordinates   505490..506179 (+) Length   229 a.a.
NCBI ID   WP_044687691.1    Uniprot ID   A0A0Z8JSK2
Organism   Streptococcus suis strain LS9N     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 500490..511179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS02530 - 500819..502162 (+) 1344 WP_044690349.1 DEAD/DEAH box helicase -
  BUC38_RS02535 - 502180..502404 (+) 225 WP_002936682.1 DUF4059 family protein -
  BUC38_RS02540 trxB 502418..503335 (+) 918 WP_044690350.1 thioredoxin-disulfide reductase -
  BUC38_RS02545 - 503345..503884 (+) 540 WP_044690351.1 DUF177 domain-containing protein -
  BUC38_RS02550 gndA 503981..505408 (+) 1428 WP_024380514.1 NADP-dependent phosphogluconate dehydrogenase -
  BUC38_RS02555 covR 505490..506179 (+) 690 WP_044687691.1 winged helix-turn-helix domain-containing protein Regulator
  BUC38_RS02560 - 506269..507393 (+) 1125 WP_044690352.1 AI-2E family transporter -
  BUC38_RS02565 - 507602..507994 (+) 393 WP_044690353.1 hypothetical protein -
  BUC38_RS02570 - 508180..509262 (+) 1083 WP_044690354.1 hypothetical protein -
  BUC38_RS12630 - 509574..510080 (+) 507 WP_228477146.1 hypothetical protein -
  BUC38_RS02580 - 510085..510915 (+) 831 WP_044690356.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26283.19 Da        Isoelectric Point: 5.6989

>NTDB_id=1145985 BUC38_RS02555 WP_044687691.1 505490..506179(+) (covR) [Streptococcus suis strain LS9N]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSRYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1145985 BUC38_RS02555 WP_044687691.1 505490..506179(+) (covR) [Streptococcus suis strain LS9N]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTGTTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCGATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTTAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGACTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8JSK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

42.373

100

0.437

Multiple sequence alignment