Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | CS883_RS07020 | Genome accession | NZ_LT635476 |
| Coordinates | 1426554..1427129 (+) | Length | 191 a.a. |
| NCBI ID | WP_001203585.1 | Uniprot ID | A0A238GWS1 |
| Organism | Helicobacter pylori isolate HE134/09 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1421554..1432129
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS883_RS06995 | uvrD | 1422245..1424290 (+) | 2046 | WP_172825134.1 | DNA helicase UvrD | - |
| CS883_RS07000 | flgA | 1424287..1424943 (+) | 657 | WP_089087243.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| CS883_RS07005 | - | 1424953..1425516 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| CS883_RS07010 | coaD | 1425516..1425989 (+) | 474 | WP_042636077.1 | pantetheine-phosphate adenylyltransferase | - |
| CS883_RS07015 | tmk | 1425991..1426566 (+) | 576 | WP_000289021.1 | dTMP kinase | - |
| CS883_RS07020 | comFC | 1426554..1427129 (+) | 576 | WP_001203585.1 | ComF family protein | Machinery gene |
| CS883_RS07025 | - | 1427164..1429200 (+) | 2037 | WP_089087244.1 | N-6 DNA methylase | - |
| CS883_RS07030 | - | 1429197..1430378 (+) | 1182 | WP_089087245.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21327.97 Da Isoelectric Point: 9.0945
>NTDB_id=1145854 CS883_RS07020 WP_001203585.1 1426554..1427129(+) (comFC) [Helicobacter pylori isolate HE134/09]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANHPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANHPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=1145854 CS883_RS07020 WP_001203585.1 1426554..1427129(+) (comFC) [Helicobacter pylori isolate HE134/09]
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCCAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTAAGGATTTTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCATATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTGTTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCCAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTAAGGATTTTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCATATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTGTTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |