Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | CS888_RS00235 | Genome accession | NZ_LT635473 |
| Coordinates | 42073..43209 (+) | Length | 378 a.a. |
| NCBI ID | WP_089086477.1 | Uniprot ID | A0A238GTD4 |
| Organism | Helicobacter pylori isolate HE136/09 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 37073..48209
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS888_RS00200 | panD | 37500..37853 (+) | 354 | WP_000142286.1 | aspartate 1-decarboxylase | - |
| CS888_RS00205 | - | 37856..38158 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CS888_RS00210 | - | 38158..39162 (+) | 1005 | WP_089086474.1 | PDZ domain-containing protein | - |
| CS888_RS00215 | comB6 | 39170..40225 (+) | 1056 | WP_089086475.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| CS888_RS00220 | comB7 | 40241..40354 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| CS888_RS00225 | comB8 | 40351..41094 (+) | 744 | WP_000660557.1 | type IV secretion system protein | Machinery gene |
| CS888_RS00230 | comB9 | 41094..42080 (+) | 987 | WP_089086476.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| CS888_RS00235 | comB10 | 42073..43209 (+) | 1137 | WP_089086477.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| CS888_RS00240 | - | 43279..44691 (+) | 1413 | WP_089086478.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| CS888_RS00245 | gmd | 44732..45877 (+) | 1146 | WP_089086479.1 | GDP-mannose 4,6-dehydratase | - |
| CS888_RS00250 | - | 45870..46802 (+) | 933 | WP_001002481.1 | GDP-L-fucose synthase family protein | - |
| CS888_RS08260 | - | 46830..47039 (-) | 210 | Protein_44 | anthranilate synthase component I | - |
| CS888_RS08350 | - | 47190..47483 (-) | 294 | WP_099167445.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42184.68 Da Isoelectric Point: 9.7473
>NTDB_id=1145786 CS888_RS00235 WP_089086477.1 42073..43209(+) (comB10) [Helicobacter pylori isolate HE136/09]
MNKWLKGAIVFIGGFATITTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKINTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFIGGFATITTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKINTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=1145786 CS888_RS00235 WP_089086477.1 42073..43209(+) (comB10) [Helicobacter pylori isolate HE136/09]
GTGAATAAGTGGCTTAAAGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCCACCATTAAAGCCTTACAAGAACAACTCAAAGCC
GCTTTAAAAGCCTTAAATTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGGATCCAAAAAT
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAAGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGAAGCAGGGTTTTCATTTCGCCCAATACTGATATATTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CAGAGTTTTTGAAGTGA
GTGAATAAGTGGCTTAAAGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCCACCATTAAAGCCTTACAAGAACAACTCAAAGCC
GCTTTAAAAGCCTTAAATTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGGATCCAAAAAT
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAAGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGAAGCAGGGTTTTCATTTCGCCCAATACTGATATATTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CAGAGTTTTTGAAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.561 |
100 |
0.966 |