Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CS890_RS01705 Genome accession   NZ_LT635471
Coordinates   343203..344003 (+) Length   266 a.a.
NCBI ID   WP_089086647.1    Uniprot ID   -
Organism   Helicobacter pylori isolate HE141/09     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 338203..349003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS890_RS01670 pseH 338702..339244 (+) 543 WP_079341521.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  CS890_RS01675 - 339177..340115 (-) 939 WP_089086644.1 tetraacyldisaccharide 4'-kinase -
  CS890_RS01680 - 340112..340894 (-) 783 WP_089086645.1 NAD+ synthase -
  CS890_RS01690 ilvC 341143..342135 (+) 993 WP_089086646.1 ketol-acid reductoisomerase -
  CS890_RS01695 minD 342160..342966 (+) 807 WP_001019079.1 septum site-determining protein MinD -
  CS890_RS01700 minE 342963..343196 (+) 234 WP_033592300.1 cell division topological specificity factor MinE -
  CS890_RS01705 dprA 343203..344003 (+) 801 WP_089086647.1 DNA-processing protein DprA Machinery gene
  CS890_RS01710 dprB 344000..344404 (+) 405 WP_089086648.1 Holliday junction resolvase RuvX Machinery gene
  CS890_RS01715 - 344692..344930 (+) 239 Protein_326 sel1 repeat family protein -
  CS890_RS01720 - 345128..345466 (+) 339 WP_000699880.1 hypothetical protein -
  CS890_RS01725 - 345450..346010 (+) 561 WP_089086649.1 hypothetical protein -
  CS890_RS01730 - 346112..346993 (-) 882 WP_089086650.1 RluA family pseudouridine synthase -
  CS890_RS01735 recJ 346993..348543 (-) 1551 WP_089086651.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29825.74 Da        Isoelectric Point: 8.5952

>NTDB_id=1145743 CS890_RS01705 WP_089086647.1 343203..344003(+) (dprA) [Helicobacter pylori isolate HE141/09]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1145743 CS890_RS01705 WP_089086647.1 343203..344003(+) (dprA) [Helicobacter pylori isolate HE141/09]
ATGAAAAGCCATTTCCAATACAGTGCGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACGAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCCTGATTTTAAGCGAATATGAAAAAGACTTCATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTAGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCTTGAACGAGAGCGACGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGTGCGAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAGCGTATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.992

100

0.97
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment